miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084824 NC_002641.1 Meleagrid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9933 - 13674 89 28.5 -35.2 NP_073297 5' arm      3' arm
9920 - 1029 89 28 -29 5' arm      3' arm
9892 + 122658 89 28 -29 5' arm      3' arm
9872 + 13589 85 26.5 -36.4 NP_073297 5' arm      3' arm
9883 + 118958 88 26 -30.6 5' arm      3' arm
9929 - 4729 88 26 -30.6 5' arm      3' arm
9890 + 122085 84 25.5 -36.1 NP_073288 5' arm      3' arm
9922 - 1602 84 25.5 -36.1 NP_073360 5' arm      3' arm
9921 - 1475 86 25 -20.1 NP_073360 5' arm      3' arm
9891 + 122212 86 25 -20.1 NP_073288 5' arm      3' arm
9887 + 121391 89 24.5 -24.6 5' arm      3' arm
9881 + 117738 89 24.5 -27.1 5' arm      3' arm
9925 - 2296 89 24.5 -24.6 5' arm      3' arm
9941 - 90797 88 24.5 -19.8 NP_073336 5' arm      3' arm
9878 + 99114 90 24 -35.3 NP_073341 5' arm      3' arm
9961 - 135496 88 24 -30.9 5' arm      3' arm
9908 + 147100 88 24 -30.9 5' arm      3' arm
9877 + 77789 89 24 -20.9 NP_073330 5' arm      3' arm
9973 - 155775 84 23.5 -22.4 NP_073366 5' arm      3' arm
9895 + 126821 84 23.5 -22.4 NP_073381 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.