miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18845965 NC_003409.1 Human herpesvirus 8

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13468 - 134471 89 21 -24.9 NP_572132 5' arm      3' arm
13467 - 134127 85 20.5 -20.2 NP_572132 5' arm      3' arm
13466 - 133884 90 22 -32.2 NP_572132 5' arm      3' arm
13465 - 133096 89 23 -21.8 NP_572132 5' arm      3' arm
13464 - 132997 90 19 -24.1 NP_572132 5' arm      3' arm
13463 - 131119 83 20 -21.5 NP_572132 5' arm      3' arm
13462 - 123783 82 19.5 -30.6 5' arm      3' arm
13461 - 121926 88 23 -22.7 kshv-mir-K12-1 5' arm      
13460 - 121623 89 22 -30.1 kshv-mir-K12-3 5' arm      3' arm
13459 - 121489 84 24.5 -22.7 kshv-mir-K12-4 5' arm      3' arm
13458 - 121341 88 24.5 -20.9 kshv-mir-K12-5       3' arm
13457 - 120834 89 20.5 -29.1 kshv-mir-K12-6 5' arm      3' arm
13456 - 120434 89 25 -19.4 kshv-mir-K12-7       3' arm
13455 - 118955 89 22 -23.8 5' arm      3' arm
13454 - 118044 86 22.5 -24.5 NP_572126 kshv-mir-K12-10a       3' arm
13453 - 117765 86 29.5 -31.6 kshv-mir-K12-12 5' arm      
13452 - 117299 89 22 -20.8 NP_572125 5' arm      3' arm
13451 - 116881 89 22.5 -29.1 NP_572125 5' arm      3' arm
13450 - 116514 86 21 -21.1 5' arm      3' arm
13449 - 115952 89 21 -30.5 NP_572124 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.