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| GenBank Identifier | RefSeq Acc. | Name |
| 18845965 | NC_003409.1 | Human herpesvirus 8 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13279 | + | 23628 | 81 | 25 | -36.6 | 5' arm 3' arm | |||
| 13351 | + | 131153 | 89 | 21 | -34.6 | NP_572132 | 5' arm 3' arm | ||
| 13297 | + | 43504 | 90 | 20.5 | -33.7 | NP_572077 | 5' arm 3' arm | ||
| 13440 | - | 111135 | 89 | 23 | -33 | NP_572120 | 5' arm 3' arm | ||
| 13466 | - | 133884 | 90 | 22 | -32.2 | NP_572132 | 5' arm 3' arm | ||
| 13453 | - | 117765 | 86 | 29.5 | -31.6 | kshv-mir-K12-12 | 5' arm | ||
| 13309 | + | 57765 | 85 | 19.5 | -31.4 | NP_572090 | 5' arm 3' arm | ||
| 13327 | + | 88012 | 87 | 20.5 | -31.1 | NP_572112 | 5' arm 3' arm | ||
| 13304 | + | 51514 | 85 | 21.5 | -31.1 | NP_572084 | 5' arm 3' arm | ||
| 13298 | + | 47570 | 90 | 21.5 | -30.8 | NP_572078 | 5' arm 3' arm | ||
| 13462 | - | 123783 | 82 | 19.5 | -30.6 | 5' arm 3' arm | |||
| 13449 | - | 115952 | 89 | 21 | -30.5 | NP_572124 | 5' arm 3' arm | ||
| 13274 | + | 13503 | 90 | 20.5 | -30.4 | NP_572057 | 5' arm 3' arm | ||
| 13365 | - | 14797 | 86 | 19 | -30.4 | NP_572058 | 5' arm 3' arm | ||
| 13460 | - | 121623 | 89 | 22 | -30.1 | kshv-mir-K12-3 | 5' arm 3' arm | ||
| 13411 | - | 88053 | 90 | 24 | -29.7 | NP_572112 | 5' arm 3' arm | ||
| 13451 | - | 116881 | 89 | 22.5 | -29.1 | NP_572125 | 5' arm 3' arm | ||
| 13457 | - | 120834 | 89 | 20.5 | -29.1 | kshv-mir-K12-6 | 5' arm 3' arm | ||
| 13367 | - | 15917 | 90 | 19 | -28.5 | NP_572059 | 5' arm 3' arm | ||
| 13354 | + | 132813 | 90 | 22 | -28.4 | NP_572132 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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