miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13456	-	120434	89	25	-19.4		kshv-mir-K12-7	3' arm
13388	-	47296	89	20	-19.6	NP_572078		5' arm      3' arm
13360	-	10084	89	21.5	-19.7	NP_572056		5' arm      3' arm
13328	+	89886	77	19.5	-19.7			5' arm      3' arm
13379	-	33800	90	24	-19.7	NP_572071		5' arm      3' arm
13377	-	26860	86	20.5	-19.9			5' arm      3' arm
13404	-	79376	85	19.5	-19.9	NP_572108		5' arm      3' arm
13316	+	67602	90	21	-19.9	NP_572098		5' arm      3' arm
13406	-	83409	87	20	-20	NP_572110		5' arm      3' arm
13281	+	29923	87	21	-20			5' arm      3' arm
13392	-	52305	82	19.5	-20.1	NP_572084		5' arm      3' arm
13419	-	96501	88	20	-20.1	NP_572115		5' arm      3' arm
13408	-	84384	89	20	-20.2	NP_572111		5' arm      3' arm
13467	-	134127	85	20.5	-20.2	NP_572132		5' arm      3' arm
13315	+	66699	90	21.5	-20.2	NP_572097		5' arm      3' arm
13381	-	38033	89	22	-20.2	NP_572074		5' arm      3' arm
13446	-	114193	87	20.5	-20.2	NP_572123		5' arm      3' arm
13426	-	102899	90	23	-20.3	NP_572119		5' arm      3' arm
13362	-	11820	81	20.5	-20.3	NP_572057		5' arm      3' arm
13341	+	121254	88	23	-20.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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