miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242472 NC_002687.1 Ectocarpus siliculosus virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10323 + 90941 86 19 -23.1 NP_077548 5' arm      3' arm
10324 + 95751 90 20.5 -19.5 NP_077552 5' arm      3' arm
10325 + 96376 88 22 -25.9 NP_077553 5' arm      3' arm
10326 + 96714 86 22.5 -22.4 NP_077553 5' arm      3' arm
10327 + 97716 90 29 -21.1 NP_077553 5' arm      3' arm
10328 + 100749 86 19.5 -25.4 NP_077556 5' arm      3' arm
10329 + 107432 90 20 -22.3 NP_077563 5' arm      3' arm
10330 + 109125 85 20.5 -29.3 NP_077565 5' arm      3' arm
10331 + 109502 90 19.5 -20.77 NP_077566 5' arm      3' arm
10332 + 111174 90 25 -28.8 NP_077568 5' arm      3' arm
10333 + 112807 86 20.5 -25.8 NP_077569 5' arm      3' arm
10334 + 115545 87 19.5 -20.3 NP_077572 5' arm      3' arm
10335 + 119360 89 21 -21 NP_077576 5' arm      3' arm
10336 + 121453 90 20.5 -27.8 NP_077578 5' arm      3' arm
10337 + 121611 84 20.5 -20.8 NP_077578 5' arm      3' arm
10338 + 129451 85 23 -21.1 NP_077586 5' arm      3' arm
10339 + 139898 89 23 -23.3 NP_077597 5' arm      3' arm
10340 + 141426 89 21.5 -21.8 NP_077599 5' arm      3' arm
10341 + 144391 87 20.5 -26.6 5' arm      3' arm
10342 + 146659 85 22 -23.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.