miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57659681 NC_006659.1 Cotesia congregata virus segment Circle32

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31510 - 14988 90 29 -22.6 5' arm      3' arm
31509 + 34142 90 26.5 -25.5 5' arm      3' arm
31508 + 23622 90 21.5 -20.5 YP_184894 5' arm      3' arm
31507 + 19658 88 20 -25.3 YP_184893 5' arm      3' arm
31506 + 15347 88 21 -20.9 5' arm      3' arm
31505 - 27555 90 24.5 -27.8 YP_184887 5' arm      3' arm
31504 - 27119 90 21.5 -23 5' arm      3' arm
31503 - 26336 89 21.5 -28.2 5' arm      3' arm
31502 - 24824 90 29 -22.6 5' arm      3' arm
31501 + 28072 89 20.5 -22.1 5' arm      3' arm
31500 + 27982 90 19 -28.1 5' arm      3' arm
31499 + 27030 90 22.5 -21.1 5' arm      3' arm
31498 + 25183 88 19.5 -20.9 5' arm      3' arm
31497 + 22801 74 25 -26.9 5' arm      3' arm
31496 + 1350 90 28 -23.3 5' arm      3' arm
31495 - 10639 89 29.5 -23.9 5' arm      3' arm
31494 - 1893 88 23.5 -25.6 5' arm      3' arm
31493 + 10556 89 24.5 -27.6 5' arm      3' arm
31492 - 8503 90 19.5 -30.5 5' arm      3' arm
31491 + 3923 90 23.5 -32.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.