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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28737 | + | 8294 | 90 | 19.5 | -20.2 | 5' arm 3' arm | |||
28734 | + | 7603 | 90 | 24 | -26.8 | 5' arm 3' arm | |||
28741 | + | 14130 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28744 | + | 17211 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28743 | + | 16068 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28742 | + | 14514 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
28736 | + | 8056 | 89 | 28.5 | -22.5 | 5' arm 3' arm | |||
28747 | + | 20292 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28746 | + | 19149 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28749 | + | 22230 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28760 | + | 34442 | 88 | 26 | -22.3 | 5' arm 3' arm | |||
28750 | + | 23373 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28753 | + | 26454 | 90 | 24.5 | -25.1 | 5' arm 3' arm | |||
28752 | + | 25311 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
28751 | + | 23757 | 89 | 19.5 | -21.5 | 5' arm 3' arm | |||
28729 | + | 3681 | 88 | 19 | -22.4 | YP_067940 | 5' arm 3' arm | ||
28728 | + | 2793 | 90 | 19 | -24.3 | YP_067940 | 5' arm 3' arm | ||
28933 | - | 2068 | 88 | 21 | -21.7 | YP_067940 | 5' arm 3' arm | ||
28725 | + | 1817 | 85 | 19 | -23.6 | YP_067940 | 5' arm 3' arm | ||
28724 | + | 684 | 89 | 19 | -20.8 | YP_067938 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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