miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28737 + 8294 90 19.5 -20.2 5' arm      3' arm
28734 + 7603 90 24 -26.8 5' arm      3' arm
28741 + 14130 90 24.5 -25.1 5' arm      3' arm
28744 + 17211 90 24.5 -25.1 5' arm      3' arm
28743 + 16068 88 22 -24.5 5' arm      3' arm
28742 + 14514 89 19.5 -21.5 5' arm      3' arm
28736 + 8056 89 28.5 -22.5 5' arm      3' arm
28747 + 20292 90 24.5 -25.1 5' arm      3' arm
28746 + 19149 88 22 -24.5 5' arm      3' arm
28749 + 22230 88 22 -24.5 5' arm      3' arm
28760 + 34442 88 26 -22.3 5' arm      3' arm
28750 + 23373 90 24.5 -25.1 5' arm      3' arm
28753 + 26454 90 24.5 -25.1 5' arm      3' arm
28752 + 25311 88 22 -24.5 5' arm      3' arm
28751 + 23757 89 19.5 -21.5 5' arm      3' arm
28729 + 3681 88 19 -22.4 YP_067940 5' arm      3' arm
28728 + 2793 90 19 -24.3 YP_067940 5' arm      3' arm
28933 - 2068 88 21 -21.7 YP_067940 5' arm      3' arm
28725 + 1817 85 19 -23.6 YP_067940 5' arm      3' arm
28724 + 684 89 19 -20.8 YP_067938 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.