miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11690	-	41136	89	22	-28.6	NP_258310		5' arm      3' arm
11692	-	42747	90	33	-25.1			5' arm      3' arm
11651	+	10563	85	21	-26.5			5' arm      3' arm
11654	+	25814	87	25	-33.5			5' arm      3' arm
11655	+	25923	90	25	-24.2			5' arm      3' arm
11656	+	26329	86	19	-22.3			5' arm      3' arm
11658	+	31682	83	19.5	-21.5	NP_258300		5' arm      3' arm
11661	+	34877	89	24	-23.5	NP_258304		5' arm      3' arm
11660	+	33110	88	23.5	-28	NP_258301		5' arm      3' arm
11679	+	110496	88	21	-23.9	NP_258381		5' arm      3' arm
11678	+	106035	89	22	-22.9	NP_258375		5' arm      3' arm
11675	+	99432	85	20.5	-22	NP_258369		5' arm      3' arm
11676	+	102370	89	22	-19.9	NP_258373		5' arm      3' arm
11677	+	103125	90	22.5	-20.4	NP_258373		5' arm      3' arm
11674	+	98395	89	22	-23.1	NP_258368		5' arm      3' arm
11673	+	89517	87	25.5	-20			5' arm      3' arm
11671	+	74081	87	20	-19.6	NP_258347		5' arm      3' arm
11662	+	41996	87	20.5	-23.6	NP_258310		5' arm      3' arm
11663	+	42117	88	20.5	-21.7	NP_258310		5' arm      3' arm
11669	+	63534	90	21.5	-22.6	NP_258336		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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