miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
88	+	4321	88	23.5	-22.5			5' arm      3' arm
112	+	24453	87	24	-34.1			5' arm      3' arm
113	+	25039	84	19.5	-29.8			5' arm      3' arm
111	+	23390	90	21	-22.2			5' arm      3' arm
109	+	22591	89	20	-34.1			5' arm      3' arm
97	+	10258	90	19	-22.6			5' arm      3' arm
107	+	21341	87	22.5	-23.1			5' arm      3' arm
108	+	22054	88	21	-22.7			5' arm      3' arm
106	+	20716	89	19.5	-25.1			5' arm      3' arm
144	-	21096	87	22	-26.6			5' arm      3' arm
110	+	22944	88	19	-31			5' arm      3' arm
146	-	25462	90	20.5	-23.5			5' arm      3' arm
87	+	4024	86	22	-21.3			5' arm      3' arm
117	-	3118	89	20	-22.7			5' arm      3' arm
90	+	4646	82	20.5	-21.6			5' arm      3' arm
86	+	2820	87	20	-29.5			5' arm      3' arm
89	+	4513	86	19	-21.9			5' arm      3' arm
147	-	25570	83	22	-26.5			5' arm      3' arm
145	-	24973	90	21.5	-25.9			5' arm      3' arm
148	-	25751	87	20.5	-24.2			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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