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GenBank Identifier | RefSeq Acc. | Name |
51556461 | NC_006150.1 | Cercopithecine herpesvirus 8 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
29163 | + | 466 | 90 | 19.5 | -23.9 | 5' arm 3' arm | |||
29164 | + | 4275 | 73 | 20 | -27.7 | YP_068099 | 5' arm 3' arm | ||
29165 | + | 13069 | 84 | 24 | -22.6 | YP_068110 | 5' arm 3' arm | ||
29166 | + | 23336 | 86 | 19 | -21.4 | YP_068124 | 5' arm 3' arm | ||
29167 | + | 26403 | 87 | 21.5 | -19.9 | 5' arm 3' arm | |||
29168 | + | 45051 | 89 | 19.5 | -26.1 | 5' arm 3' arm | |||
29169 | + | 59543 | 89 | 20 | -19.4 | 5' arm 3' arm | |||
29170 | + | 71033 | 89 | 23 | -19.4 | 5' arm 3' arm | |||
29171 | + | 72333 | 90 | 22.5 | -24.2 | YP_068176 | 5' arm 3' arm | ||
29172 | + | 75627 | 89 | 21 | -26.9 | YP_068180 | 5' arm 3' arm | ||
29173 | + | 85133 | 89 | 20.5 | -24.2 | YP_068185 | 5' arm 3' arm | ||
29174 | + | 87252 | 87 | 19 | -24.7 | 5' arm 3' arm | |||
29175 | + | 87454 | 83 | 24 | -21.3 | YP_068186 | 5' arm 3' arm | ||
29176 | + | 88299 | 87 | 22.5 | -27.9 | YP_068189 | 5' arm 3' arm | ||
29177 | + | 88815 | 90 | 23 | -30.3 | YP_068189 | 5' arm 3' arm | ||
29178 | + | 89716 | 88 | 23.5 | -31.52 | 5' arm 3' arm | |||
29179 | + | 91729 | 90 | 21.5 | -27.2 | YP_068191 | 5' arm 3' arm | ||
29180 | + | 92201 | 90 | 25.5 | -29.2 | YP_068192 | 5' arm 3' arm | ||
29181 | + | 92406 | 90 | 23 | -27.7 | YP_068190 | 5' arm 3' arm | ||
29182 | + | 92529 | 87 | 26 | -24.7 | YP_068190 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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