miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51556461 NC_006150.1 Cercopithecine herpesvirus 8

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29333 - 161299 88 25 -28.2 5' arm      3' arm
29230 + 147089 88 25 -27.9 5' arm      3' arm
29188 + 104167 88 25 -32.5 YP_068200 5' arm      3' arm
29247 + 174899 88 24.5 -25.6 YP_068260 5' arm      3' arm
29339 - 172467 90 24.5 -19.5 YP_068256 5' arm      3' arm
29321 - 134402 89 24.5 -19.8 YP_068228 5' arm      3' arm
29165 + 13069 84 24 -22.6 YP_068110 5' arm      3' arm
29265 - 298 87 24 -22.87 5' arm      3' arm
29233 + 149805 89 24 -19.4 YP_068236 5' arm      3' arm
29268 - 1320 90 24 -23.7 YP_068095 5' arm      3' arm
29303 - 74436 90 24 -31.4 YP_068178 5' arm      3' arm
29175 + 87454 83 24 -21.3 YP_068186 5' arm      3' arm
29207 + 117975 90 24 -22.4 YP_068214 5' arm      3' arm
29254 + 203135 88 24 -28.8 YP_068294 5' arm      3' arm
29291 - 56769 90 24 -25.9 YP_068167 5' arm      3' arm
29308 - 82604 87 24 -22.6 5' arm      3' arm
29294 - 63305 87 23.5 -23.7 YP_068172 5' arm      3' arm
29189 + 104971 89 23.5 -20.6 5' arm      3' arm
29341 - 182507 90 23.5 -20.9 5' arm      3' arm
29304 - 75062 87 23.5 -27.5 YP_068180 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.