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| GenBank Identifier | RefSeq Acc. | Name |
| 51556461 | NC_006150.1 | Cercopithecine herpesvirus 8 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29251 | + | 186472 | 90 | 30.5 | -34.5 | 5' arm 3' arm | |||
| 29335 | - | 161713 | 90 | 29.5 | -22.1 | 5' arm 3' arm | |||
| 29334 | - | 161544 | 90 | 29.5 | -20.84 | 5' arm 3' arm | |||
| 29239 | + | 160929 | 90 | 28.5 | -26.6 | 5' arm 3' arm | |||
| 29336 | - | 162266 | 87 | 27.5 | -28.4 | YP_068246 | 5' arm 3' arm | ||
| 29241 | + | 161372 | 90 | 27.5 | -29.7 | 5' arm 3' arm | |||
| 29344 | - | 186561 | 90 | 27 | -27.7 | 5' arm 3' arm | |||
| 29200 | + | 114253 | 90 | 26.5 | -20.5 | YP_068209 | 5' arm 3' arm | ||
| 29242 | + | 161468 | 88 | 26.5 | -24.6 | 5' arm 3' arm | |||
| 29257 | + | 214685 | 88 | 26.5 | -31.8 | YP_068308 | 5' arm 3' arm | ||
| 29182 | + | 92529 | 87 | 26 | -24.7 | YP_068190 | 5' arm 3' arm | ||
| 29249 | + | 180676 | 87 | 26 | -29 | YP_068265 | 5' arm 3' arm | ||
| 29355 | - | 214771 | 86 | 26 | -32.1 | YP_068308 | 5' arm 3' arm | ||
| 29356 | - | 214944 | 89 | 26 | -26.6 | YP_068308 | 5' arm 3' arm | ||
| 29331 | - | 161018 | 90 | 26 | -26.1 | 5' arm 3' arm | |||
| 29348 | - | 196440 | 90 | 26 | -22.1 | 5' arm 3' arm | |||
| 29180 | + | 92201 | 90 | 25.5 | -29.2 | YP_068192 | 5' arm 3' arm | ||
| 29288 | - | 50486 | 89 | 25.5 | -21.7 | 5' arm 3' arm | |||
| 29187 | + | 103802 | 89 | 25.5 | -33.7 | YP_068200 | 5' arm 3' arm | ||
| 29263 | + | 220042 | 88 | 25 | -25.1 | YP_068317 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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