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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24756 | - | 159733 | 90 | 23.5 | -24.7 | NP_944452 | 5' arm 3' arm | ||
| 24491 | + | 121547 | 87 | 19.5 | -29.1 | NP_944452 | 5' arm 3' arm | ||
| 24531 | + | 154754 | 88 | 20.5 | -24.8 | NP_944452 | 5' arm 3' arm | ||
| 24701 | - | 125812 | 90 | 22.5 | -21.3 | NP_944452 | 5' arm 3' arm | ||
| 24699 | - | 123795 | 90 | 21 | -26.5 | NP_944452 | 5' arm 3' arm | ||
| 24538 | + | 158614 | 85 | 19 | -25.7 | NP_944452 | 5' arm 3' arm | ||
| 24536 | + | 157910 | 90 | 19.5 | -24.3 | NP_944452 | 5' arm 3' arm | ||
| 24532 | + | 154893 | 89 | 22.5 | -23.7 | NP_944452 | 5' arm 3' arm | ||
| 24496 | + | 122439 | 90 | 23.5 | -24.7 | NP_944452 | 5' arm 3' arm | ||
| 24541 | + | 159717 | 90 | 19.5 | -22 | NP_944452 | 5' arm 3' arm | ||
| 24755 | - | 158953 | 88 | 21.5 | -22.4 | NP_944452 | 5' arm 3' arm | ||
| 24537 | + | 158377 | 90 | 21 | -26.5 | NP_944452 | 5' arm 3' arm | ||
| 24754 | - | 156525 | 90 | 19 | -23.3 | NP_944452 | 5' arm 3' arm | ||
| 24499 | + | 127393 | 84 | 20.5 | -19.8 | NP_944452 | 5' arm 3' arm | ||
| 24752 | - | 154629 | 90 | 24 | -20.1 | NP_944452 | 5' arm 3' arm | ||
| 24698 | - | 123558 | 85 | 19 | -25.7 | NP_944452 | 5' arm 3' arm | ||
| 24519 | + | 148864 | 89 | 19 | -25.4 | NP_944451 | 5' arm 3' arm | ||
| 24745 | - | 148936 | 88 | 20 | -22.8 | NP_944451 | 5' arm 3' arm | ||
| 24518 | + | 148764 | 90 | 20 | -30 | NP_944451 | 5' arm 3' arm | ||
| 24515 | + | 146000 | 90 | 20 | -25.8 | NP_944450 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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