miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638196 NC_005264.1 Psittacid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24575 - 32383 90 22.5 -35.5 NP_944395 5' arm      3' arm
24383 + 41092 79 21.5 -35.2 5' arm      3' arm
24503 + 130485 87 23 -34.4 5' arm      3' arm
24749 - 151687 87 23 -34.4 5' arm      3' arm
24489 + 119917 90 25 -34.2 5' arm      3' arm
24763 - 162255 90 25 -34.2 5' arm      3' arm
24487 + 117074 90 21 -33.5 NP_944439 5' arm      3' arm
24366 + 29777 90 20 -33 NP_944394 5' arm      3' arm
24338 + 5233 90 20.5 -32.6 5' arm      3' arm
24711 - 130574 89 20.5 -31.9 5' arm      3' arm
24524 + 151598 89 20.5 -31.9 5' arm      3' arm
24349 + 17321 90 24 -31.6 NP_944388 5' arm      3' arm
24404 + 52198 88 21 -31.5 NP_944405 5' arm      3' arm
24654 - 93729 90 22.5 -31.5 NP_944423 5' arm      3' arm
24710 - 130392 87 30.5 -31.3 5' arm      3' arm
24525 + 151780 87 30.5 -31.3 5' arm      3' arm
24612 - 64539 86 22 -31.2 NP_944409 5' arm      3' arm
24727 - 137537 89 21 -31 NP_944445 5' arm      3' arm
24480 + 113807 89 20.5 -31 NP_944436 5' arm      3' arm
24364 + 27924 90 21.5 -30.9 NP_944393 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.