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GenBank Identifier | RefSeq Acc. | Name |
38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
24575 | - | 32383 | 90 | 22.5 | -35.5 | NP_944395 | 5' arm 3' arm | ||
24383 | + | 41092 | 79 | 21.5 | -35.2 | 5' arm 3' arm | |||
24503 | + | 130485 | 87 | 23 | -34.4 | 5' arm 3' arm | |||
24749 | - | 151687 | 87 | 23 | -34.4 | 5' arm 3' arm | |||
24489 | + | 119917 | 90 | 25 | -34.2 | 5' arm 3' arm | |||
24763 | - | 162255 | 90 | 25 | -34.2 | 5' arm 3' arm | |||
24487 | + | 117074 | 90 | 21 | -33.5 | NP_944439 | 5' arm 3' arm | ||
24366 | + | 29777 | 90 | 20 | -33 | NP_944394 | 5' arm 3' arm | ||
24338 | + | 5233 | 90 | 20.5 | -32.6 | 5' arm 3' arm | |||
24711 | - | 130574 | 89 | 20.5 | -31.9 | 5' arm 3' arm | |||
24524 | + | 151598 | 89 | 20.5 | -31.9 | 5' arm 3' arm | |||
24349 | + | 17321 | 90 | 24 | -31.6 | NP_944388 | 5' arm 3' arm | ||
24404 | + | 52198 | 88 | 21 | -31.5 | NP_944405 | 5' arm 3' arm | ||
24654 | - | 93729 | 90 | 22.5 | -31.5 | NP_944423 | 5' arm 3' arm | ||
24710 | - | 130392 | 87 | 30.5 | -31.3 | 5' arm 3' arm | |||
24525 | + | 151780 | 87 | 30.5 | -31.3 | 5' arm 3' arm | |||
24612 | - | 64539 | 86 | 22 | -31.2 | NP_944409 | 5' arm 3' arm | ||
24727 | - | 137537 | 89 | 21 | -31 | NP_944445 | 5' arm 3' arm | ||
24480 | + | 113807 | 89 | 20.5 | -31 | NP_944436 | 5' arm 3' arm | ||
24364 | + | 27924 | 90 | 21.5 | -30.9 | NP_944393 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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