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| GenBank Identifier | RefSeq Acc. | Name |
| 38638196 | NC_005264.1 | Psittacid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24726 | - | 137279 | 90 | 21 | -19.7 | NP_944445 | 5' arm 3' arm | ||
| 24686 | - | 117075 | 85 | 20.5 | -19.7 | NP_944439 | 5' arm 3' arm | ||
| 24396 | + | 47000 | 90 | 19.5 | -19.7 | NP_944402 | 5' arm 3' arm | ||
| 24432 | + | 68939 | 88 | 20 | -19.7 | NP_944410 | 5' arm 3' arm | ||
| 24753 | - | 154779 | 84 | 20.5 | -19.8 | NP_944441 | 5' arm 3' arm | ||
| 24382 | + | 40271 | 89 | 22 | -19.8 | NP_944400 | 5' arm 3' arm | ||
| 24499 | + | 127393 | 84 | 20.5 | -19.8 | NP_944452 | 5' arm 3' arm | ||
| 24346 | + | 16358 | 90 | 21.5 | -19.8 | 5' arm 3' arm | |||
| 24459 | + | 93528 | 89 | 20.5 | -19.9 | NP_944423 | 5' arm 3' arm | ||
| 24355 | + | 21515 | 90 | 23 | -19.9 | NP_944389 | 5' arm 3' arm | ||
| 24439 | + | 76811 | 85 | 22 | -20 | NP_944415 | 5' arm 3' arm | ||
| 24721 | - | 134466 | 90 | 20.5 | -20 | NP_944443 | 5' arm 3' arm | ||
| 24418 | + | 60843 | 85 | 23.5 | -20 | NP_944409 | 5' arm 3' arm | ||
| 24659 | - | 97747 | 86 | 23 | -20 | NP_944427 | 5' arm 3' arm | ||
| 24441 | + | 78468 | 90 | 20.5 | -20.1 | NP_944416 | 5' arm 3' arm | ||
| 24762 | - | 161431 | 90 | 21.5 | -20.1 | 5' arm 3' arm | |||
| 24752 | - | 154629 | 90 | 24 | -20.1 | NP_944452 | 5' arm 3' arm | ||
| 24670 | - | 105651 | 90 | 21 | -20.1 | 5' arm 3' arm | |||
| 24447 | + | 84397 | 90 | 23 | -20.1 | NP_944419 | 5' arm 3' arm | ||
| 24490 | + | 120741 | 90 | 21.5 | -20.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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