miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13552	+	13183	89	25.5	-20	NP_599048		5' arm      3' arm
13587	-	36755	88	25	-25.8	NP_599085		5' arm      3' arm
13560	+	24665	89	24.5	-25			5' arm      3' arm
13555	+	15454	89	24.5	-21.6	NP_599051		5' arm      3' arm
13547	+	7538	89	24.5	-22.64	NP_599043		5' arm      3' arm
13568	+	34017	79	23.5	-33.2			5' arm      3' arm
13572	-	1223	90	23	-22.5	NP_599034		5' arm      3' arm
13565	+	31854	90	23	-32.7	NP_599077		5' arm      3' arm
13553	+	14250	90	22.5	-19.6	NP_599049		5' arm      3' arm
13579	-	12477	89	22.5	-23	NP_599047		5' arm      3' arm
13563	+	28362	90	22.5	-22.5	NP_599071		5' arm      3' arm
13554	+	15296	89	22	-22.7	NP_599051		5' arm      3' arm
13544	+	4771	88	22	-25.7	NP_599037		5' arm      3' arm
13550	+	8518	90	22	-31.3	NP_599043		5' arm      3' arm
13551	+	12855	84	21.5	-20.5	NP_599047		5' arm      3' arm
13542	+	1582	87	21.5	-21	NP_599034		5' arm      3' arm
13541	+	1134	90	21.5	-20.2	NP_599034		5' arm      3' arm
13540	+	961	89	21.5	-23.24	NP_599034		5' arm      3' arm
13566	+	31968	89	21.5	-25.1	NP_599077		5' arm      3' arm
13562	+	27567	89	21	-28.2	NP_599069		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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