miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12856 + 42970 88 20 -26.5 NP_569803 5' arm      3' arm
12857 + 43200 87 23 -24.6 NP_569803 5' arm      3' arm
12855 + 42787 88 21.5 -23.3 NP_569803 5' arm      3' arm
12859 + 43624 86 19.5 -26.3 NP_569803 5' arm      3' arm
12980 - 43138 88 23.5 -32.7 NP_569803 5' arm      3' arm
12981 - 43398 88 20 -22.1 NP_569803 5' arm      3' arm
12854 + 42357 87 19.5 -21 NP_569803 5' arm      3' arm
12979 - 41370 80 23.5 -22.3 NP_569802 5' arm      3' arm
12978 - 41139 85 25 -28 NP_569801 5' arm      3' arm
12851 + 41052 90 24 -25.6 NP_569801 5' arm      3' arm
12977 - 40971 90 21 -21.9 NP_569800 5' arm      3' arm
12976 - 40850 89 25.5 -30.6 NP_569800 5' arm      3' arm
12850 + 40882 90 19.5 -20.6 NP_569800 5' arm      3' arm
12974 - 40323 89 24 -27.6 NP_569799 5' arm      3' arm
12975 - 40554 89 23 -32.4 NP_569799 5' arm      3' arm
12972 - 40004 89 20.5 -29.2 NP_569798 5' arm      3' arm
12973 - 40091 87 20 -28.6 NP_569798 5' arm      3' arm
12971 - 39803 88 20.5 -26.1 NP_569797 5' arm      3' arm
12849 + 39759 88 22 -21.1 NP_569797 5' arm      3' arm
12970 - 39627 90 24 -25.2 NP_569796 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.