miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12867 + 47820 83 21 -21.2 NP_569813 5' arm      3' arm
12868 + 47988 90 20 -26.4 NP_569813 5' arm      3' arm
12991 - 47808 89 20.5 -20 NP_569813 5' arm      3' arm
12992 - 47906 90 25.5 -25.8 NP_569813 5' arm      3' arm
12990 - 47643 87 19.5 -21.5 NP_569812 5' arm      3' arm
12989 - 47353 88 20 -26.8 NP_569811 5' arm      3' arm
12988 - 46969 90 20.5 -22.8 NP_569810 5' arm      3' arm
12866 + 47008 89 21.5 -20.7 NP_569810 5' arm      3' arm
12863 + 46145 85 23.5 -27.4 NP_569808 5' arm      3' arm
12985 - 45689 90 20 -24.4 NP_569808 5' arm      3' arm
12986 - 45922 88 22 -21.1 NP_569808 5' arm      3' arm
12987 - 46332 89 19 -22 NP_569808 5' arm      3' arm
12864 + 46294 82 19 -23 NP_569808 5' arm      3' arm
12983 - 44576 90 22 -24.7 NP_569805 5' arm      3' arm
12862 + 44850 89 21 -29.4 NP_569805 5' arm      3' arm
12861 + 44679 89 20.5 -23.7 NP_569805 5' arm      3' arm
12853 + 42111 87 22.5 -33.3 NP_569803 5' arm      3' arm
12982 - 44127 90 23.5 -23.4 NP_569803 5' arm      3' arm
12859 + 43624 86 19.5 -26.3 NP_569803 5' arm      3' arm
12854 + 42357 87 19.5 -21 NP_569803 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.