miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18496886 NC_003387.1 Mycobacteriophage TM4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13005 - 52452 89 21 -24.1 NP_569825 5' arm      3' arm
12881 + 52364 89 20.5 -21.4 NP_569825 5' arm      3' arm
13006 - 52591 90 23 -20.3 NP_569825 5' arm      3' arm
13004 - 52307 88 24.5 -26.5 NP_569824 5' arm      3' arm
13003 - 52163 90 21 -22.9 NP_569823 5' arm      3' arm
12880 + 51896 88 19 -25.4 NP_569823 5' arm      3' arm
13002 - 51894 89 20 -21.8 NP_569822 5' arm      3' arm
12879 + 51675 87 20 -21.7 NP_569822 5' arm      3' arm
12878 + 51425 90 20 -29.2 NP_569821 5' arm      3' arm
12877 + 51142 87 20 -23.2 NP_569820 5' arm      3' arm
12999 - 50900 89 23.5 -31.3 NP_569819 5' arm      3' arm
12875 + 50891 89 19 -25.3 NP_569819 5' arm      3' arm
12874 + 50777 90 19.5 -24.3 NP_569819 5' arm      3' arm
12997 - 50213 90 21 -23.8 NP_569818 5' arm      3' arm
12995 - 49632 88 20 -21.2 NP_569816 5' arm      3' arm
12994 - 48866 87 22 -23.6 NP_569815 5' arm      3' arm
12871 + 49033 85 22.5 -23 NP_569815 5' arm      3' arm
12870 + 48902 89 25 -33.4 NP_569815 5' arm      3' arm
12869 + 48500 89 20.5 -20.3 NP_569814 5' arm      3' arm
12993 - 48686 87 20.5 -22 NP_569814 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.