miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633396 NC_000902.1 Bacteriophage VT2-Sa provirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
948 + 9153 89 25.5 -27.4 NP_050520 5' arm      3' arm
949 + 9862 87 21.5 -25.9 NP_050521 5' arm      3' arm
950 + 13949 89 21.5 -26.6 NP_050526 5' arm      3' arm
951 + 16260 89 21.5 -24.7 NP_050530 5' arm      3' arm
952 + 17141 89 25 -28.1 5' arm      3' arm
953 + 19750 87 22.5 -27.1 NP_050538 5' arm      3' arm
954 + 24772 90 20 -20.8 NP_050542 5' arm      3' arm
955 + 25085 86 19 -37.2 NP_050542 5' arm      3' arm
956 + 25484 85 21.5 -21.9 5' arm      3' arm
957 + 25640 86 21.5 -24.9 NP_050544 5' arm      3' arm
958 + 32479 89 23 -29.7 5' arm      3' arm
959 + 33303 88 23 -24 NP_050551 5' arm      3' arm
960 + 35852 89 23 -24.2 NP_050555 5' arm      3' arm
961 + 37201 87 22 -26 NP_050557 5' arm      3' arm
962 + 40036 89 20.5 -21.2 NP_050560 5' arm      3' arm
963 + 41568 90 21 -20.6 NP_050561 5' arm      3' arm
964 + 41933 90 19.5 -21.5 NP_050561 5' arm      3' arm
965 + 44538 87 19 -34.4 5' arm      3' arm
966 + 45859 89 20 -23.4 NP_050566 5' arm      3' arm
967 + 46649 84 23.5 -23.6 NP_050568 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.