miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 5' -55.5 NC_004084.1 + 12899 0.66 0.737346
Target:  5'- -cCCggCGucCUCGGaGugGCCGACCGg -3'
miRNA:   3'- uuGGa-GCuuGAGUCgCugUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 28325 0.66 0.737346
Target:  5'- cACCUCGAGCUC-GC--CGCCGuCCu -3'
miRNA:   3'- uUGGAGCUUGAGuCGcuGUGGCuGGc -5'
16502 5' -55.5 NC_004084.1 + 22360 0.66 0.737346
Target:  5'- uACCggacgGAACUCAGCGACAUCauCCa -3'
miRNA:   3'- uUGGag---CUUGAGUCGCUGUGGcuGGc -5'
16502 5' -55.5 NC_004084.1 + 3338 0.66 0.737346
Target:  5'- -gUCUCGGACgggggaggAGCG-CGCCGGCCa -3'
miRNA:   3'- uuGGAGCUUGag------UCGCuGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 28860 0.66 0.731058
Target:  5'- gAACCUCGAACgggugggcguuccgCAGCGAgAUCucGCCGc -3'
miRNA:   3'- -UUGGAGCUUGa-------------GUCGCUgUGGc-UGGC- -5'
16502 5' -55.5 NC_004084.1 + 2153 0.66 0.726846
Target:  5'- cGACgUCGuACUCguaGGCGACACCaGCaCGg -3'
miRNA:   3'- -UUGgAGCuUGAG---UCGCUGUGGcUG-GC- -5'
16502 5' -55.5 NC_004084.1 + 48046 0.66 0.726846
Target:  5'- cGACgUCGAACUCauccGGaCGGCGCUGcacACCGu -3'
miRNA:   3'- -UUGgAGCUUGAG----UC-GCUGUGGC---UGGC- -5'
16502 5' -55.5 NC_004084.1 + 27480 0.66 0.726846
Target:  5'- -uCCUCGAGCUCGacGuCGACGaggCGAUCGa -3'
miRNA:   3'- uuGGAGCUUGAGU--C-GCUGUg--GCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 40426 0.66 0.726846
Target:  5'- aGACCUucaCGAACgcucgaCAGCG-CGCCGACg- -3'
miRNA:   3'- -UUGGA---GCUUGa-----GUCGCuGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 50976 0.66 0.725791
Target:  5'- gAGCCugagagaguucaUCGAGgUCGGUGAUACCccgugacGACCGa -3'
miRNA:   3'- -UUGG------------AGCUUgAGUCGCUGUGG-------CUGGC- -5'
16502 5' -55.5 NC_004084.1 + 10860 0.66 0.716252
Target:  5'- -uCCUCGAAC--GGCGucuccucCACUGGCCGg -3'
miRNA:   3'- uuGGAGCUUGagUCGCu------GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 57376 0.66 0.705577
Target:  5'- cGACCUCGGcgaACUCgAGCGcGCccCCGAUCGc -3'
miRNA:   3'- -UUGGAGCU---UGAG-UCGC-UGu-GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 13137 0.66 0.705577
Target:  5'- aGACUUCGA---CGGCGACGauucggaCGACCGa -3'
miRNA:   3'- -UUGGAGCUugaGUCGCUGUg------GCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 45558 0.66 0.705577
Target:  5'- gGACCUCGAAg-CGGaguACGCCGACgGg -3'
miRNA:   3'- -UUGGAGCUUgaGUCgc-UGUGGCUGgC- -5'
16502 5' -55.5 NC_004084.1 + 771 0.66 0.705577
Target:  5'- aGGCCgaUCG-GCUCgucgaGGCGACGCgCGACCu -3'
miRNA:   3'- -UUGG--AGCuUGAG-----UCGCUGUG-GCUGGc -5'
16502 5' -55.5 NC_004084.1 + 31219 0.66 0.704505
Target:  5'- gAACCUCGAgguacgcAUUCAGCGuCG-CGAUCGu -3'
miRNA:   3'- -UUGGAGCU-------UGAGUCGCuGUgGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 57217 0.67 0.684023
Target:  5'- gGACUUCGAccGCUUAcGCGACuacguccaCGACCGc -3'
miRNA:   3'- -UUGGAGCU--UGAGU-CGCUGug------GCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 22564 0.67 0.651351
Target:  5'- gAugUUCG-ACUCGGCGuucgGCCGAUCGg -3'
miRNA:   3'- -UugGAGCuUGAGUCGCug--UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 46184 0.67 0.640412
Target:  5'- cGACCggaGAACUCcuCGACgaGCUGGCCGa -3'
miRNA:   3'- -UUGGag-CUUGAGucGCUG--UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 40478 0.67 0.629465
Target:  5'- cGGCCUCGAACgCGaCGAC-CUGAUCGa -3'
miRNA:   3'- -UUGGAGCUUGaGUcGCUGuGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.