miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 3' -56.8 NC_006151.1 + 130092 0.66 0.866428
Target:  5'- ---cGAGCAGCucgcGCUCCucGGCCGUg -3'
miRNA:   3'- ucuuCUCGUCGcacaCGAGG--UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 110962 0.66 0.866428
Target:  5'- cGgcGGGCGuccuccacgaucGCGUGcGCcUCGGCCGCa -3'
miRNA:   3'- uCuuCUCGU------------CGCACaCGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 104406 0.66 0.866428
Target:  5'- ----cGGCGGCGUGcugGC-CCGcGCCGCc -3'
miRNA:   3'- ucuucUCGUCGCACa--CGaGGU-CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 10407 0.66 0.866428
Target:  5'- gGGGAGAGCGGgGUGacgccGCgggUgGGCCGa -3'
miRNA:   3'- -UCUUCUCGUCgCACa----CGa--GgUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 133624 0.66 0.866428
Target:  5'- uGGggGucGCGGCGgccggggcgGUGgUCCGGgUGCg -3'
miRNA:   3'- -UCuuCu-CGUCGCa--------CACgAGGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 95030 0.66 0.866428
Target:  5'- ----uAGCGGC-UGUGCUCgaAGCCGUc -3'
miRNA:   3'- ucuucUCGUCGcACACGAGg-UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 93437 0.66 0.858778
Target:  5'- gAGggGGGCgAGCGgggGUcgCC-GCCGCg -3'
miRNA:   3'- -UCuuCUCG-UCGCacaCGa-GGuCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 31678 0.66 0.858778
Target:  5'- aGGAAGGGCcgGGCc---GCcgagCCGGCCGCg -3'
miRNA:   3'- -UCUUCUCG--UCGcacaCGa---GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 19294 0.66 0.858778
Target:  5'- cGggGccAGCGGCGcGgGCggCCGGUCGCc -3'
miRNA:   3'- uCuuC--UCGUCGCaCaCGa-GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 75067 0.66 0.858778
Target:  5'- aAGAAGucaaaGGCcGgGUGcaGCUCCAGgCGCa -3'
miRNA:   3'- -UCUUC-----UCGuCgCACa-CGAGGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 130259 0.66 0.858778
Target:  5'- cGGAAGAGgcCGGCGcGcgGCcCCgaGGCCGCg -3'
miRNA:   3'- -UCUUCUC--GUCGCaCa-CGaGG--UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 88499 0.66 0.858001
Target:  5'- cGAAG-GCGGCGUccaccggGUGCUCgu-CCGCg -3'
miRNA:   3'- uCUUCuCGUCGCA-------CACGAGgucGGCG- -5'
29402 3' -56.8 NC_006151.1 + 102098 0.66 0.85092
Target:  5'- cGAGGAGCAcGUGgucgcGUGCgCgGGCCGg -3'
miRNA:   3'- uCUUCUCGU-CGCa----CACGaGgUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 121992 0.66 0.85092
Target:  5'- ---uGGGCGGCGcGUGCcgcuUCCAcGCgCGCg -3'
miRNA:   3'- ucuuCUCGUCGCaCACG----AGGU-CG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 3680 0.66 0.85092
Target:  5'- --cGGGGCGGCGg--GCcCCGGgCGCg -3'
miRNA:   3'- ucuUCUCGUCGCacaCGaGGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 10009 0.66 0.85092
Target:  5'- -cGAGAGCGGCGgcgGCggUC-GCCGCg -3'
miRNA:   3'- ucUUCUCGUCGCacaCGa-GGuCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 17704 0.66 0.85092
Target:  5'- aGGAAG-GCuGCuGUGUGCgcCCGGgUGCg -3'
miRNA:   3'- -UCUUCuCGuCG-CACACGa-GGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 129928 0.66 0.85092
Target:  5'- -cGAGAGC-GCGaUGcUGC-CCAGCgGCa -3'
miRNA:   3'- ucUUCUCGuCGC-AC-ACGaGGUCGgCG- -5'
29402 3' -56.8 NC_006151.1 + 97995 0.66 0.84286
Target:  5'- ---cGGGCGGCGUGgccgcguagGCggcgCCGGCCa- -3'
miRNA:   3'- ucuuCUCGUCGCACa--------CGa---GGUCGGcg -5'
29402 3' -56.8 NC_006151.1 + 55470 0.66 0.84286
Target:  5'- cGggGGGCGcGCGcccgGCgccgcggacggCCAGCCGCc -3'
miRNA:   3'- uCuuCUCGU-CGCaca-CGa----------GGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.