miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 51900 0.66 0.679855
Target:  5'- cGCGGgAUCGGGCuUGggU-GCcucuGCCGGUu -3'
miRNA:   3'- -UGUCgUGGUCCG-ACuuAaCG----CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 13326 0.66 0.679855
Target:  5'- -gAGCGCCAgcGGCagGAGUUGgaaGCCaGCa -3'
miRNA:   3'- ugUCGUGGU--CCGa-CUUAACg--CGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 2586 0.66 0.679855
Target:  5'- cGCGGCACgUGGGUUGAGUcUGCccgcauGCCaGCg -3'
miRNA:   3'- -UGUCGUG-GUCCGACUUA-ACG------CGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 25479 0.66 0.676606
Target:  5'- gACGGCucGCCAGGCgggcUGGuccucgauuucguaGUUGaUGUCGGCg -3'
miRNA:   3'- -UGUCG--UGGUCCG----ACU--------------UAAC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 62308 0.66 0.673353
Target:  5'- aACAGCAUgGGuucgucaucaucaccGCcGAua-GCGCCGGCg -3'
miRNA:   3'- -UGUCGUGgUC---------------CGaCUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 43110 0.66 0.670097
Target:  5'- cCAGCACCAGGgUGuacgcaugacggGUGCCGa- -3'
miRNA:   3'- uGUCGUGGUCCgACuuaa--------CGCGGCcg -5'
30694 5' -56.6 NC_006552.1 + 20631 0.66 0.669011
Target:  5'- gGCAGCGCCugcugccuGGCacGAGUgagcagGCGCUcguaGGCg -3'
miRNA:   3'- -UGUCGUGGu-------CCGa-CUUAa-----CGCGG----CCG- -5'
30694 5' -56.6 NC_006552.1 + 53258 0.66 0.658134
Target:  5'- gGC-GCGCCAGGCUcgcuaggucGGA--GCGCaUGGCg -3'
miRNA:   3'- -UGuCGUGGUCCGA---------CUUaaCGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 5572 0.66 0.658134
Target:  5'- gGCAGaACuCGGGCcGGGagGUGCUGGCu -3'
miRNA:   3'- -UGUCgUG-GUCCGaCUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 38971 0.66 0.658134
Target:  5'- -gGGCGaCAGGUggcGAAacUGCGCCGGUc -3'
miRNA:   3'- ugUCGUgGUCCGa--CUUa-ACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 34620 0.66 0.658134
Target:  5'- cACAGCGCCGGGaUUGGuagcaGCGUC-GCa -3'
miRNA:   3'- -UGUCGUGGUCC-GACUuaa--CGCGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 26359 0.66 0.658134
Target:  5'- aACGGCACgUAGGg-GAA--GUGCCGGUg -3'
miRNA:   3'- -UGUCGUG-GUCCgaCUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 60069 0.66 0.647232
Target:  5'- uGCGGCACCugcacGGCgaUGcAUUGCGCauGCc -3'
miRNA:   3'- -UGUCGUGGu----CCG--ACuUAACGCGgcCG- -5'
30694 5' -56.6 NC_006552.1 + 20796 0.66 0.625399
Target:  5'- aGCAGC-CC-GGC--GAUUGCgcuGCCGGCc -3'
miRNA:   3'- -UGUCGuGGuCCGacUUAACG---CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 33700 0.66 0.625399
Target:  5'- cGCAGuCugC-GGCgUGua-UGCGCCGGUa -3'
miRNA:   3'- -UGUC-GugGuCCG-ACuuaACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 23695 0.66 0.625399
Target:  5'- gACGGCAUCagggucggaaacGGGCUGcauggUGCugcuaccacucGCCGGCa -3'
miRNA:   3'- -UGUCGUGG------------UCCGACuua--ACG-----------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 5790 0.66 0.625399
Target:  5'- gGCAGCGUCAGGCg-----GUGgCGGCg -3'
miRNA:   3'- -UGUCGUGGUCCGacuuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 61629 0.66 0.625399
Target:  5'- uCA-CGCCAGGUgcuggccGAGccgccgGCGCCGGCa -3'
miRNA:   3'- uGUcGUGGUCCGa------CUUaa----CGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 49846 0.67 0.61885
Target:  5'- uGCAGCGCCgcAGGCUGcucgagcuucuguUUG-GCCuGGCg -3'
miRNA:   3'- -UGUCGUGG--UCCGACuu-----------AACgCGG-CCG- -5'
30694 5' -56.6 NC_006552.1 + 19812 0.67 0.603588
Target:  5'- cGCGGC-CCGGGCUc--UUGC-UCGGCg -3'
miRNA:   3'- -UGUCGuGGUCCGAcuuAACGcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.