Results 21 - 40 of 48 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 197587 | 0.67 | 0.936392 |
Target: 5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3' miRNA: 3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 43345 | 0.67 | 0.933333 |
Target: 5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3' miRNA: 3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 189308 | 0.68 | 0.925841 |
Target: 5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3' miRNA: 3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 106474 | 0.68 | 0.925841 |
Target: 5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3' miRNA: 3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 220028 | 0.68 | 0.920184 |
Target: 5'- aCGCUCGuggUGGUgCGGGCACAGa- -3' miRNA: 3'- -GCGGGU---GCCAgGCCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 58178 | 0.68 | 0.908113 |
Target: 5'- -aCUCACGGUUgggCGGGCACAAUg -3' miRNA: 3'- gcGGGUGCCAG---GCCCGUGUUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 41666 | 0.68 | 0.901702 |
Target: 5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3' miRNA: 3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 234570 | 0.68 | 0.901702 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 195969 | 0.68 | 0.901702 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 176090 | 0.68 | 0.895043 |
Target: 5'- gGCCCACGaUCCGGGUu--AUCu -3' miRNA: 3'- gCGGGUGCcAGGCCCGuguUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 146292 | 0.68 | 0.895043 |
Target: 5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3' miRNA: 3'- gCGGGugCCA---GGCCCG----UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 95399 | 0.68 | 0.895043 |
Target: 5'- aGCCgCgACGGUUCGGGCGgAGUUu -3' miRNA: 3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 88512 | 0.69 | 0.880999 |
Target: 5'- -uUCCACGcUCaCGGGCACGGUCa -3' miRNA: 3'- gcGGGUGCcAG-GCCCGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 35985 | 0.69 | 0.880999 |
Target: 5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3' miRNA: 3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 102391 | 0.69 | 0.880999 |
Target: 5'- uGUUCGCGGUaggcgUCGGGCACGAUg -3' miRNA: 3'- gCGGGUGCCA-----GGCCCGUGUUAg -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 69061 | 0.69 | 0.880999 |
Target: 5'- cCGgCUACGcGUCCGGGUucCAGUCg -3' miRNA: 3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 150022 | 0.69 | 0.873622 |
Target: 5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3' miRNA: 3'- gCGGGUGCC------------AGGCCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 84780 | 0.7 | 0.850141 |
Target: 5'- aCGCCCGCGGUCgaggaggagGGGUACGGa- -3' miRNA: 3'- -GCGGGUGCCAGg--------CCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 234612 | 0.7 | 0.841884 |
Target: 5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3' miRNA: 3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 65813 | 0.7 | 0.841884 |
Target: 5'- uCGCCCcuGCGGUCCGcaaucggcGGCGCAGc- -3' miRNA: 3'- -GCGGG--UGCCAGGC--------CCGUGUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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