Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 23820 | 0.82 | 0.421873 |
|
Target: 5'- --uUGCAGCUGgGUAUACCCAGc -3' miRNA: 3'- aauGCGUCGACgCAUAUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 23769 | 0.71 | 0.955263 |
|
Target: 5'- aUUACcCAGCUGgGUAUACCUAc -3' miRNA: 3'- -AAUGcGUCGACgCAUAUGGGUc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 23658 | 0.76 | 0.734341 |
|
Target: 5'- -aACcCAGCUGgGUAUACCCAGc -3' miRNA: 3'- aaUGcGUCGACgCAUAUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 23617 | 0.68 | 0.989293 |
|
Target: 5'- aUACcCAGCUGgGUAauccaguagguaUACCCAGg -3' miRNA: 3'- aAUGcGUCGACgCAU------------AUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 19118 | 0.67 | 0.995068 |
|
Target: 5'- -cGCGUguuuacAGCaGCGUAUGCCCGc -3' miRNA: 3'- aaUGCG------UCGaCGCAUAUGGGUc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 18219 | 0.76 | 0.767096 |
|
Target: 5'- -aGCuuGGCUGCGUAUGCCCGc -3' miRNA: 3'- aaUGcgUCGACGCAUAUGGGUc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 10211 | 0.72 | 0.923552 |
|
Target: 5'- --cUGCAGCUGCGUGUAagaCAGg -3' miRNA: 3'- aauGCGUCGACGCAUAUgg-GUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 10062 | 0.72 | 0.935339 |
|
Target: 5'- -cACGCAGCUGCaGUuUGCCUAc -3' miRNA: 3'- aaUGCGUCGACG-CAuAUGGGUc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home