Results 21 - 40 of 180 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 197428 | 0.66 | 0.946647 |
Target: 5'- aCgGCGC-CCAGCUCGUCCa- -3' miRNA: 3'- -GgCGCGcGGUCGGGUAGGgg -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 191541 | 0.66 | 0.946647 |
Target: 5'- cCCGUGCuuaCAGCCU-UCCCCu -3' miRNA: 3'- -GGCGCGcg-GUCGGGuAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 233008 | 0.66 | 0.946647 |
Target: 5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3' miRNA: 3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 95760 | 0.66 | 0.946647 |
Target: 5'- gCC-CGUGCCGGgaCCC-UCCCCg -3' miRNA: 3'- -GGcGCGCGGUC--GGGuAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 187426 | 0.66 | 0.946647 |
Target: 5'- cCCGCGCGgCGGUCUguuAUCCgCg -3' miRNA: 3'- -GGCGCGCgGUCGGG---UAGGgG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 197531 | 0.66 | 0.946647 |
Target: 5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3' miRNA: 3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 144167 | 0.66 | 0.946647 |
Target: 5'- cUCGCGCGCCGagaucGCCgAggCCCUg -3' miRNA: 3'- -GGCGCGCGGU-----CGGgUa-GGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 38397 | 0.66 | 0.946191 |
Target: 5'- aCCGCGUcggccucGCCGGCCCGagcgCgCCg -3' miRNA: 3'- -GGCGCG-------CGGUCGGGUa---GgGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 143074 | 0.66 | 0.941976 |
Target: 5'- aCCGCgGUGCaC-GCCCGUgCCCa -3' miRNA: 3'- -GGCG-CGCG-GuCGGGUAgGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 197393 | 0.66 | 0.941976 |
Target: 5'- -gGCGCG-CGGCaCgGUCCCCg -3' miRNA: 3'- ggCGCGCgGUCG-GgUAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 1431 | 0.66 | 0.941976 |
Target: 5'- cCCGcCGCGaaauGCCCcuGUCCCCg -3' miRNA: 3'- -GGC-GCGCggu-CGGG--UAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 148556 | 0.66 | 0.941976 |
Target: 5'- aCGgGCGCC-GCCCGUUCUUu -3' miRNA: 3'- gGCgCGCGGuCGGGUAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 38390 | 0.66 | 0.941976 |
Target: 5'- aCCGC-CGCC-GUCCGUCgCCg -3' miRNA: 3'- -GGCGcGCGGuCGGGUAGgGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 233146 | 0.66 | 0.941976 |
Target: 5'- -gGCGCG-CGGCaCgGUCCCCg -3' miRNA: 3'- ggCGCGCgGUCG-GgUAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 174774 | 0.66 | 0.941976 |
Target: 5'- uCCGCGUuCCAauGCaCCGUUCCCg -3' miRNA: 3'- -GGCGCGcGGU--CG-GGUAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 164708 | 0.66 | 0.941976 |
Target: 5'- gCCGCGCGCCcuCCaCcgCCgCCa -3' miRNA: 3'- -GGCGCGCGGucGG-GuaGG-GG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 58082 | 0.66 | 0.941976 |
Target: 5'- aCUGCGuCGCCuuGCCC-UCCUCc -3' miRNA: 3'- -GGCGC-GCGGu-CGGGuAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 221379 | 0.66 | 0.941976 |
Target: 5'- cCCGCucCGCCAccccgcGCCCG-CCCCa -3' miRNA: 3'- -GGCGc-GCGGU------CGGGUaGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 78367 | 0.66 | 0.941976 |
Target: 5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3' miRNA: 3'- -GGCGCG----------CGGUCGGGuAGGGG- -5' |
|||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | - | 40087 | 0.66 | 0.941976 |
Target: 5'- gCCGcCGCGCCAcacGCUgAgCCCCg -3' miRNA: 3'- -GGC-GCGCGGU---CGGgUaGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home