miRNA display CGI


Results 1 - 20 of 85 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 153416 0.66 0.999537
Target:  5'- cGGCCuACGCCGAGCGgCACGGc- -3'
miRNA:   3'- uUUGG-UGUGGUUUGUgGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 4859 0.66 0.999537
Target:  5'- uAugCGCcCCGGGCACCAgGGGc -3'
miRNA:   3'- uUugGUGuGGUUUGUGGUgUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 113422 0.66 0.999467
Target:  5'- uGGCCACgacuauccaggucuuGCCGuGGCGCCugGGGAu -3'
miRNA:   3'- uUUGGUG---------------UGGU-UUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 157339 0.66 0.999415
Target:  5'- --gUgGCgGCCAAGCGCCugGGGGa -3'
miRNA:   3'- uuuGgUG-UGGUUUGUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 40277 0.66 0.999415
Target:  5'- cGGACCGCACC---CACC-CAGGu -3'
miRNA:   3'- -UUUGGUGUGGuuuGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 161107 0.66 0.999415
Target:  5'- -cACCACAUCAAACA-CACAGu- -3'
miRNA:   3'- uuUGGUGUGGUUUGUgGUGUCcu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 91902 0.66 0.999267
Target:  5'- --gUCGCGCCGGACAUC-CAGGc -3'
miRNA:   3'- uuuGGUGUGGUUUGUGGuGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 61300 0.66 0.999267
Target:  5'- --cCCAUAgCAGAgACCugAGGAg -3'
miRNA:   3'- uuuGGUGUgGUUUgUGGugUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 107229 0.66 0.999251
Target:  5'- cGGGCCuugauuaGCGCCAccuCGCCGCAGGc -3'
miRNA:   3'- -UUUGG-------UGUGGUuu-GUGGUGUCCu -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 19347 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 13209 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 16278 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 22416 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 34692 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 28554 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 25485 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 31623 0.66 0.999088
Target:  5'- gGGGCCGC-CCGGGCugC-CGGGGu -3'
miRNA:   3'- -UUUGGUGuGGUUUGugGuGUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 45270 0.66 0.999088
Target:  5'- --cCCAC-CCGGACGCCA-AGGAc -3'
miRNA:   3'- uuuGGUGuGGUUUGUGGUgUCCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 + 44842 0.66 0.998873
Target:  5'- uAAAUCugACCAAACAgCACGcucGGAu -3'
miRNA:   3'- -UUUGGugUGGUUUGUgGUGU---CCU- -5'
MIMAT0003423 ebv-miR-BART12 -47.1 NC_007605.1 - 5525 0.66 0.998873
Target:  5'- cGAGCCuuGCACCcAACAagGCAGGAc -3'
miRNA:   3'- -UUUGG--UGUGGuUUGUggUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.