miRNA display CGI


Results 1 - 20 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 171245 0.67 0.996912
Target:  5'- -cGGGGGGCGCCGcGCGggcGCAGc -3'
miRNA:   3'- auUCCCCUGUGGUcCGUa--UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 171194 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 171047 0.68 0.993931
Target:  5'- -cGGGGGGCAUCGGGgGgugggGCAu -3'
miRNA:   3'- auUCCCCUGUGGUCCgUa----UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 170707 0.67 0.996912
Target:  5'- -cGGGGGGCGCCGcGCGggcGCAGc -3'
miRNA:   3'- auUCCCCUGUGGUcCGUa--UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 170185 0.67 0.996912
Target:  5'- -cGGGGGGCGCCGcGCGggcGCAGc -3'
miRNA:   3'- auUCCCCUGUGGUcCGUa--UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 170134 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169987 0.68 0.993931
Target:  5'- -cGGGGGGCAUCGGGgGgugggGCAu -3'
miRNA:   3'- auUCCCCUGUGGUCCgUa----UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169648 0.68 0.994834
Target:  5'- -cGGGGGGCgccGCCGGGC--GCAGc -3'
miRNA:   3'- auUCCCCUG---UGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169597 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 169002 0.72 0.945911
Target:  5'- aGAGGGGccCACCGGGCccGCGAc -3'
miRNA:   3'- aUUCCCCu-GUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 166767 0.66 0.999056
Target:  5'- -cAGGGGugGCUAGGCcUGg-- -3'
miRNA:   3'- auUCCCCugUGGUCCGuAUguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 162849 0.7 0.978907
Target:  5'- --cGGGGGC-CCGGGCuccUACAAc -3'
miRNA:   3'- auuCCCCUGuGGUCCGu--AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 161904 0.67 0.997427
Target:  5'- --cGGGGGCucCCGGGCccACGAa -3'
miRNA:   3'- auuCCCCUGu-GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 160164 0.69 0.985534
Target:  5'- aGAGGGGGCgACCAGaGCGcuggacaccUACAAc -3'
miRNA:   3'- aUUCCCCUG-UGGUC-CGU---------AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 157378 0.68 0.992904
Target:  5'- -uGGGGGGCACCGGuGUGgugGCGu -3'
miRNA:   3'- auUCCCCUGUGGUC-CGUa--UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 155330 0.69 0.988976
Target:  5'- aGGGGaGGAgGCCGGGCGcUAUAGg -3'
miRNA:   3'- aUUCC-CCUgUGGUCCGU-AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 153927 0.66 0.998245
Target:  5'- gGAGGGGGC-CaGGGCcUGCAGg -3'
miRNA:   3'- aUUCCCCUGuGgUCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 153904 0.69 0.985534
Target:  5'- uUGAGGGGcGC-CCAGGCGUcCGGg -3'
miRNA:   3'- -AUUCCCC-UGuGGUCCGUAuGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 150546 0.66 0.998245
Target:  5'- gAGGGGGAauagcguCCAGGCAUcuuuCAGg -3'
miRNA:   3'- aUUCCCCUgu-----GGUCCGUAu---GUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 143208 0.69 0.990439
Target:  5'- gGAGGccgccgcaaGGACGCCGGGCcgGCu- -3'
miRNA:   3'- aUUCC---------CCUGUGGUCCGuaUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.