Results 21 - 40 of 148 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 58691 | 0.73 | 0.911147 |
Target: 5'- --uGGGGGCACCAGGggcccaGUACAc -3' miRNA: 3'- auuCCCCUGUGGUCCg-----UAUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 47000 | 0.68 | 0.993931 |
Target: 5'- cAGGGuGGugGCCAGGCcguuGUugGAu -3' miRNA: 3'- aUUCC-CCugUGGUCCG----UAugUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 36863 | 0.69 | 0.990439 |
Target: 5'- aGGGGGGACAUguGGCuggACc- -3' miRNA: 3'- aUUCCCCUGUGguCCGua-UGuu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 35294 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 35104 | 0.66 | 0.999242 |
Target: 5'- aGGGGGGcugACACCGGGCc----- -3' miRNA: 3'- aUUCCCC---UGUGGUCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 34769 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 34431 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 33727 | 0.69 | 0.987345 |
Target: 5'- gGAGGGGAgCAgCAGGguUGCu- -3' miRNA: 3'- aUUCCCCU-GUgGUCCguAUGuu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 32453 | 0.7 | 0.970259 |
Target: 5'- cUGGGGGGAC-CgGGGCAguggACAGg -3' miRNA: 3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 32225 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 31700 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 31362 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 30658 | 0.69 | 0.987345 |
Target: 5'- gGAGGGGAgCAgCAGGguUGCu- -3' miRNA: 3'- aUUCCCCU-GUgGUCCguAUGuu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 29384 | 0.7 | 0.970259 |
Target: 5'- cUGGGGGGAC-CgGGGCAguggACAGg -3' miRNA: 3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 29156 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 28631 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 28293 | 0.67 | 0.996912 |
Target: 5'- cGAGGaGGCGCCAGGC--GCGGg -3' miRNA: 3'- aUUCCcCUGUGGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 27589 | 0.69 | 0.987345 |
Target: 5'- gGAGGGGAgCAgCAGGguUGCu- -3' miRNA: 3'- aUUCCCCU-GUgGUCCguAUGuu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 26315 | 0.7 | 0.970259 |
Target: 5'- cUGGGGGGAC-CgGGGCAguggACAGg -3' miRNA: 3'- -AUUCCCCUGuGgUCCGUa---UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 26088 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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