miRNA display CGI


Results 1 - 20 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 169002 0.72 0.945911
Target:  5'- aGAGGGGccCACCGGGCccGCGAc -3'
miRNA:   3'- aUUCCCCu-GUGGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 162849 0.7 0.978907
Target:  5'- --cGGGGGC-CCGGGCuccUACAAc -3'
miRNA:   3'- auuCCCCUGuGGUCCGu--AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 161904 0.67 0.997427
Target:  5'- --cGGGGGCucCCGGGCccACGAa -3'
miRNA:   3'- auuCCCCUGu-GGUCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 160164 0.69 0.985534
Target:  5'- aGAGGGGGCgACCAGaGCGcuggacaccUACAAc -3'
miRNA:   3'- aUUCCCCUG-UGGUC-CGU---------AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 155330 0.69 0.988976
Target:  5'- aGGGGaGGAgGCCGGGCGcUAUAGg -3'
miRNA:   3'- aUUCC-CCUgUGGUCCGU-AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 140773 0.68 0.991744
Target:  5'- cAGGGGGAgACUuucgGGGCAUugGu -3'
miRNA:   3'- aUUCCCCUgUGG----UCCGUAugUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 140005 1.01 0.038025
Target:  5'- cUAAGGGGACACCAGGCAUACAAg -3'
miRNA:   3'- -AUUCCCCUGUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 136015 0.85 0.345953
Target:  5'- gUGAGGGGA-GCCAGGCGUGCAGa -3'
miRNA:   3'- -AUUCCCCUgUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 135765 0.68 0.991744
Target:  5'- gUGAGGGGAU-CCAGGUgaagGCAGg -3'
miRNA:   3'- -AUUCCCCUGuGGUCCGua--UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 134861 0.69 0.990439
Target:  5'- --cGGGGAgGCCAGGUAgccCAGc -3'
miRNA:   3'- auuCCCCUgUGGUCCGUau-GUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 129782 0.69 0.988976
Target:  5'- --uGGGGcCACUgucaaGGGCAUGCAAu -3'
miRNA:   3'- auuCCCCuGUGG-----UCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 117472 0.66 0.999056
Target:  5'- gAGGGaGGAgGCUAGGCGUcCGg -3'
miRNA:   3'- aUUCC-CCUgUGGUCCGUAuGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 116369 0.69 0.987345
Target:  5'- gGAGGGGGCGCUgAGGCcucACAu -3'
miRNA:   3'- aUUCCCCUGUGG-UCCGua-UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 98380 0.66 0.999056
Target:  5'- aGAGGGGucGCAaaagcgggcCCAGGcCAUGCAc -3'
miRNA:   3'- aUUCCCC--UGU---------GGUCC-GUAUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 82072 0.76 0.770571
Target:  5'- aAAGGGGGCACCAGGgA-ACAu -3'
miRNA:   3'- aUUCCCCUGUGGUCCgUaUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 82015 0.69 0.990439
Target:  5'- cUGAGGGGAUACUGGGUcaACu- -3'
miRNA:   3'- -AUUCCCCUGUGGUCCGuaUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 74312 0.67 0.997869
Target:  5'- cAGGGGGAUGCCAgaggccgcguGGCGUGg-- -3'
miRNA:   3'- aUUCCCCUGUGGU----------CCGUAUguu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 68166 0.66 0.998245
Target:  5'- --cGGGGGCAUauaGGGCAU-CAGg -3'
miRNA:   3'- auuCCCCUGUGg--UCCGUAuGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 63125 0.66 0.999056
Target:  5'- gGAGGGGGCAgCAgccccgcgauucGGCGuUGCAGa -3'
miRNA:   3'- aUUCCCCUGUgGU------------CCGU-AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 59664 0.66 0.999242
Target:  5'- gGAGGGGAgGCagaucucagGGGCGUGCc- -3'
miRNA:   3'- aUUCCCCUgUGg--------UCCGUAUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.