Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10286 | 3' | -53.5 | NC_002687.1 | + | 161408 | 0.74 | 0.813734 |
Target: 5'- -cCGUCGUCGGaacuguCGaAGCACGUGCGCGa -3' miRNA: 3'- guGCAGUAGCU------GC-UCGUGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 110415 | 0.66 | 0.99457 |
Target: 5'- -cCGUCGUCGAC-AGCACAcacgacaucUaCGCACu -3' miRNA: 3'- guGCAGUAGCUGcUCGUGU---------AcGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 283544 | 0.66 | 0.995223 |
Target: 5'- uCACGagggggcUCG-CGACacuauGCACAUGUGCACg -3' miRNA: 3'- -GUGC-------AGUaGCUGcu---CGUGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 67876 | 0.66 | 0.996501 |
Target: 5'- gGgGUCgaacuugcuGUUGACGuGCACAacGCGCGCa -3' miRNA: 3'- gUgCAG---------UAGCUGCuCGUGUa-CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 267837 | 0.7 | 0.949852 |
Target: 5'- gGCgGUCGUCuGugGAGCGCGcgguacaguucuugaUGCGCAg -3' miRNA: 3'- gUG-CAGUAG-CugCUCGUGU---------------ACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 253420 | 0.69 | 0.962708 |
Target: 5'- gCGCGUCAccgauguUCGACGA-CACGUuGCGUAUu -3' miRNA: 3'- -GUGCAGU-------AGCUGCUcGUGUA-CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 184433 | 0.69 | 0.969212 |
Target: 5'- gACGUguaucccaaAUCGGCGAGUguauGCAUGuCGCGCa -3' miRNA: 3'- gUGCAg--------UAGCUGCUCG----UGUAC-GCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 109018 | 0.68 | 0.982732 |
Target: 5'- cCGCGUCuugcgucugaucuuGUCGGCGgaAGCAUcgGCGCu- -3' miRNA: 3'- -GUGCAG--------------UAGCUGC--UCGUGuaCGCGug -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 107674 | 0.68 | 0.986682 |
Target: 5'- aACGUUuUCGGCGAgGUACAcGUGCAa -3' miRNA: 3'- gUGCAGuAGCUGCU-CGUGUaCGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 233889 | 0.66 | 0.993762 |
Target: 5'- aGCaGUUGgaaaaGGCG-GCACAUGCGUACg -3' miRNA: 3'- gUG-CAGUag---CUGCuCGUGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 17370 | 0.67 | 0.989516 |
Target: 5'- gGCaGUCcggCGGCGuuuuGCGCA-GCGCACa -3' miRNA: 3'- gUG-CAGua-GCUGCu---CGUGUaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 156070 | 0.68 | 0.98506 |
Target: 5'- cCAUGgCGUCGACGucGCACAUGgCGUg- -3' miRNA: 3'- -GUGCaGUAGCUGCu-CGUGUAC-GCGug -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 80118 | 0.74 | 0.822096 |
Target: 5'- gCGCGUCAggaUCGACGAcCAUcaGCGCACa -3' miRNA: 3'- -GUGCAGU---AGCUGCUcGUGuaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 80789 | 0.67 | 0.989516 |
Target: 5'- aACGUCGguUCG-CGGGCGCAgGUaauGCACg -3' miRNA: 3'- gUGCAGU--AGCuGCUCGUGUaCG---CGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 45765 | 0.73 | 0.875717 |
Target: 5'- aCGCuUCGUCGA-GAGCAUuuUGCGCACc -3' miRNA: 3'- -GUGcAGUAGCUgCUCGUGu-ACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 233632 | 0.68 | 0.983292 |
Target: 5'- aGCG-CAgaaGAUG-GCACGUGCGCAa -3' miRNA: 3'- gUGCaGUag-CUGCuCGUGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 65870 | 0.67 | 0.990744 |
Target: 5'- cCACGUCAagGACGAGCugGUagGUAa -3' miRNA: 3'- -GUGCAGUagCUGCUCGugUAcgCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 145484 | 0.66 | 0.99457 |
Target: 5'- gCGCGcC-UCGGCGAGCAgAUcggcaaguucGCGUACu -3' miRNA: 3'- -GUGCaGuAGCUGCUCGUgUA----------CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 94620 | 0.72 | 0.895742 |
Target: 5'- uCAUGaUCGUCGACGaAGCGCAucacgucugUGcCGCGCa -3' miRNA: 3'- -GUGC-AGUAGCUGC-UCGUGU---------AC-GCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 133216 | 0.69 | 0.966224 |
Target: 5'- cCAUGUCcUUGAUGAGCGCgcccugcuugacGUGCGCcCa -3' miRNA: 3'- -GUGCAGuAGCUGCUCGUG------------UACGCGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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