miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 46463 0.66 1
Target:  5'- cUUUCCAGccugacacUUUCCGUUuuGUAGCACg -3'
miRNA:   3'- cGAAGGUUu-------AAAGGCAGugCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 20977 0.66 1
Target:  5'- uGCUcUCCGAAggcgCCG--AUGCAACACu -3'
miRNA:   3'- -CGA-AGGUUUaaa-GGCagUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 268673 0.67 1
Target:  5'- uCUUCUcucaccaCGUCGCGUAGCACu -3'
miRNA:   3'- cGAAGGuuuaaagGCAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 61597 0.66 1
Target:  5'- gGCUUUCGGca-UCCGgCACGUAcACACa -3'
miRNA:   3'- -CGAAGGUUuaaAGGCaGUGCGU-UGUG- -5'
10295 3' -46 NC_002687.1 + 128060 0.66 1
Target:  5'- aGCUUUCuuAUUUCCGagAgGC-ACGCu -3'
miRNA:   3'- -CGAAGGuuUAAAGGCagUgCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 297912 0.67 1
Target:  5'- gGCUUCgGcuccagCCG-CACGCAACAa -3'
miRNA:   3'- -CGAAGgUuuaaa-GGCaGUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 22172 0.67 1
Target:  5'- aGCaUUCAGGcagugUCCGUCGCGCAuUAUg -3'
miRNA:   3'- -CGaAGGUUUaa---AGGCAGUGCGUuGUG- -5'
10295 3' -46 NC_002687.1 + 259039 0.66 1
Target:  5'- -aUUCCAcgcucaUCCGcCGCGCGACGa -3'
miRNA:   3'- cgAAGGUuuaa--AGGCaGUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 251771 0.66 1
Target:  5'- -gUUCCAAAcauacacucucgauUUUCCGgugCGCGCGucCACu -3'
miRNA:   3'- cgAAGGUUU--------------AAAGGCa--GUGCGUu-GUG- -5'
10295 3' -46 NC_002687.1 + 247451 0.66 1
Target:  5'- gGC-UCCGAAcuucugCCGUCuCGCGuccGCACa -3'
miRNA:   3'- -CGaAGGUUUaaa---GGCAGuGCGU---UGUG- -5'
10295 3' -46 NC_002687.1 + 110407 0.66 1
Target:  5'- ---aCCAAAUc-CCGUCGuCGaCAGCACa -3'
miRNA:   3'- cgaaGGUUUAaaGGCAGU-GC-GUUGUG- -5'
10295 3' -46 NC_002687.1 + 32700 0.66 1
Target:  5'- -aUUCUgucaAAAUUgggguaGUCGCGCAGCACg -3'
miRNA:   3'- cgAAGG----UUUAAagg---CAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 83310 0.67 1
Target:  5'- aGCUUCUAcggcaucCCGUCGgcuaGCGACACc -3'
miRNA:   3'- -CGAAGGUuuaaa--GGCAGUg---CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 93576 0.66 1
Target:  5'- cGCcgUCGAcuAUUUCCGUCAUcaCAACACc -3'
miRNA:   3'- -CGaaGGUU--UAAAGGCAGUGc-GUUGUG- -5'
10295 3' -46 NC_002687.1 + 12984 0.67 1
Target:  5'- aUUUCUAAAUUUCCcccaucauGUCGCGCcuCAUu -3'
miRNA:   3'- cGAAGGUUUAAAGG--------CAGUGCGuuGUG- -5'
10295 3' -46 NC_002687.1 + 301503 0.66 1
Target:  5'- uGC-UCCAAGacagagcgUUCCGUCACG-GACAg -3'
miRNA:   3'- -CGaAGGUUUa-------AAGGCAGUGCgUUGUg -5'
10295 3' -46 NC_002687.1 + 256519 0.66 1
Target:  5'- cGCUcUCCGAGUagaCGUCGCG--GCACa -3'
miRNA:   3'- -CGA-AGGUUUAaagGCAGUGCguUGUG- -5'
10295 3' -46 NC_002687.1 + 247771 0.66 1
Target:  5'- ---gCCAAGUUUUac-CGCGCGGCGCg -3'
miRNA:   3'- cgaaGGUUUAAAGgcaGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 46332 0.66 1
Target:  5'- uGCUcUUCAAucgUCCauGUCACuGCGACACc -3'
miRNA:   3'- -CGA-AGGUUuaaAGG--CAGUG-CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 235113 0.66 1
Target:  5'- uGCUUCCGGGg--CCGUC-CGgGAUg- -3'
miRNA:   3'- -CGAAGGUUUaaaGGCAGuGCgUUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.