miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 5' -52 NC_002687.1 + 38462 0.66 0.999546
Target:  5'- --cGGCaUuuGUUGCGcCCGCUCCCa -3'
miRNA:   3'- gguUUGcAggUAACGCaGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 72724 0.66 0.999546
Target:  5'- gCAGcauCGUCCGUcauaaGCGcCCACgcugaCCCCa -3'
miRNA:   3'- gGUUu--GCAGGUAa----CGCaGGUGa----GGGG- -5'
10296 5' -52 NC_002687.1 + 203024 0.66 0.999546
Target:  5'- gUCAAGCGUCCAcgugacuccgUUGgGgucgCCACUCaaCa -3'
miRNA:   3'- -GGUUUGCAGGU----------AACgCa---GGUGAGggG- -5'
10296 5' -52 NC_002687.1 + 64044 0.66 0.999536
Target:  5'- gCCGucuAUGUCCuuacgAUUGaCGUCCGCgccuuguUCCCUg -3'
miRNA:   3'- -GGUu--UGCAGG-----UAAC-GCAGGUG-------AGGGG- -5'
10296 5' -52 NC_002687.1 + 311349 0.66 0.999443
Target:  5'- cUCGggUGUacaguguaUGUUGUGUCCACUUCCg -3'
miRNA:   3'- -GGUuuGCAg-------GUAACGCAGGUGAGGGg -5'
10296 5' -52 NC_002687.1 + 330545 0.66 0.999443
Target:  5'- -uGAACGcCCAguUUGCGUCCGCUg--- -3'
miRNA:   3'- ggUUUGCaGGU--AACGCAGGUGAgggg -5'
10296 5' -52 NC_002687.1 + 136729 0.66 0.999409
Target:  5'- --cAACaUCCAUUGCGUuggaggcguuuaccCCGCUCUCUc -3'
miRNA:   3'- gguUUGcAGGUAACGCA--------------GGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 304873 0.66 0.999321
Target:  5'- gCCAGugGaCCGaacucgGgGUCCACaUUCCCg -3'
miRNA:   3'- -GGUUugCaGGUaa----CgCAGGUG-AGGGG- -5'
10296 5' -52 NC_002687.1 + 173834 0.66 0.999321
Target:  5'- uCCAcuuGCGccUCCAcUUGCGccUCCAgUCCCa -3'
miRNA:   3'- -GGUu--UGC--AGGU-AACGC--AGGUgAGGGg -5'
10296 5' -52 NC_002687.1 + 173882 0.66 0.999321
Target:  5'- uCCAcuuGCGccUCCAcUUGCGccUCCAgUCCCa -3'
miRNA:   3'- -GGUu--UGC--AGGU-AACGC--AGGUgAGGGg -5'
10296 5' -52 NC_002687.1 + 154514 0.66 0.999007
Target:  5'- ---uGCGUCUucUGCGUCCuCUCCg- -3'
miRNA:   3'- gguuUGCAGGuaACGCAGGuGAGGgg -5'
10296 5' -52 NC_002687.1 + 194128 0.66 0.998989
Target:  5'- gUCAAcgcCGUCCGccUGCGcCCGCUcguuuggCCCCg -3'
miRNA:   3'- -GGUUu--GCAGGUa-ACGCaGGUGA-------GGGG- -5'
10296 5' -52 NC_002687.1 + 153893 0.67 0.998808
Target:  5'- gCAAACGUCg---GCGUCCACaCCa- -3'
miRNA:   3'- gGUUUGCAGguaaCGCAGGUGaGGgg -5'
10296 5' -52 NC_002687.1 + 165046 0.67 0.998808
Target:  5'- aCGAACGUCCcc-GCGUCUccguCUaCCUCa -3'
miRNA:   3'- gGUUUGCAGGuaaCGCAGGu---GA-GGGG- -5'
10296 5' -52 NC_002687.1 + 87990 0.67 0.998576
Target:  5'- -aAGACGUCgAc-GUGUCCAgcgaacucuucCUCCCCg -3'
miRNA:   3'- ggUUUGCAGgUaaCGCAGGU-----------GAGGGG- -5'
10296 5' -52 NC_002687.1 + 86044 0.67 0.998576
Target:  5'- gCCAGACGggCC--UGUGUCacccuuUUCCCCg -3'
miRNA:   3'- -GGUUUGCa-GGuaACGCAGgu----GAGGGG- -5'
10296 5' -52 NC_002687.1 + 170632 0.67 0.998576
Target:  5'- uCCGAcaACGagUCGUUGuUGUCCuACUCCUCa -3'
miRNA:   3'- -GGUU--UGCa-GGUAAC-GCAGG-UGAGGGG- -5'
10296 5' -52 NC_002687.1 + 293750 0.67 0.998576
Target:  5'- -aAGAUGaUCU-UUGCGUCCuGCUCCCg -3'
miRNA:   3'- ggUUUGC-AGGuAACGCAGG-UGAGGGg -5'
10296 5' -52 NC_002687.1 + 149104 0.67 0.998576
Target:  5'- aCCGucGCGUCCAaUG-GaaCACUCCCUg -3'
miRNA:   3'- -GGUu-UGCAGGUaACgCagGUGAGGGG- -5'
10296 5' -52 NC_002687.1 + 50705 0.67 0.998576
Target:  5'- gCCAca-GUCCg--GCGcugaaagaUCCACUCCCUc -3'
miRNA:   3'- -GGUuugCAGGuaaCGC--------AGGUGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.