miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 157961 0.66 0.999122
Target:  5'- uGCGAUCUaUCCGacgAUGCCAAuCAUCGAa -3'
miRNA:   3'- -UGUUGGGaAGGCg--UGUGGUU-GUAGCU- -5'
10300 5' -52 NC_002687.1 + 296336 0.66 0.999122
Target:  5'- cACAucauGCCCcagCUGCACACUu-CGUCGGu -3'
miRNA:   3'- -UGU----UGGGaa-GGCGUGUGGuuGUAGCU- -5'
10300 5' -52 NC_002687.1 + 208092 0.66 0.999122
Target:  5'- aACGACCCg--CGaagGCACC-ACGUCGAc -3'
miRNA:   3'- -UGUUGGGaagGCg--UGUGGuUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 119753 0.66 0.999122
Target:  5'- gACAACUCUUCUGC-CGgCGACGUa-- -3'
miRNA:   3'- -UGUUGGGAAGGCGuGUgGUUGUAgcu -5'
10300 5' -52 NC_002687.1 + 330870 0.66 0.999122
Target:  5'- aGCAgGCCCgcUCGCugGCCAGCAg--- -3'
miRNA:   3'- -UGU-UGGGaaGGCGugUGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 163964 0.66 0.999122
Target:  5'- gACGACUCUgucucguacUCCGUGuCGCCAucuuCGUCGGu -3'
miRNA:   3'- -UGUUGGGA---------AGGCGU-GUGGUu---GUAGCU- -5'
10300 5' -52 NC_002687.1 + 328797 0.66 0.999122
Target:  5'- aGCAugCCU--CGUAgCGCUGACAUCGGa -3'
miRNA:   3'- -UGUugGGAagGCGU-GUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 76352 0.66 0.998939
Target:  5'- gACGAUgCUUCCaCAC-CCAGCAcgUCGGu -3'
miRNA:   3'- -UGUUGgGAAGGcGUGuGGUUGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 204168 0.66 0.998939
Target:  5'- -gGGCCCUcgggUCGCAUAUCAGCG-CGGg -3'
miRNA:   3'- ugUUGGGAa---GGCGUGUGGUUGUaGCU- -5'
10300 5' -52 NC_002687.1 + 281141 0.66 0.998725
Target:  5'- cACGGCCUUUCUGCuCACCuguuUUGAa -3'
miRNA:   3'- -UGUUGGGAAGGCGuGUGGuuguAGCU- -5'
10300 5' -52 NC_002687.1 + 239373 0.66 0.998725
Target:  5'- gUAGCCuUUUUCGUACACCGACAa--- -3'
miRNA:   3'- uGUUGG-GAAGGCGUGUGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 249364 0.66 0.998725
Target:  5'- aACGACCCcuUUCgGCGC-CCGGCcugGUUGAu -3'
miRNA:   3'- -UGUUGGG--AAGgCGUGuGGUUG---UAGCU- -5'
10300 5' -52 NC_002687.1 + 182468 0.66 0.998475
Target:  5'- aACGACUUggCCGCuuuCGCCAGCugcgcuUCGGg -3'
miRNA:   3'- -UGUUGGGaaGGCGu--GUGGUUGu-----AGCU- -5'
10300 5' -52 NC_002687.1 + 131588 0.66 0.998475
Target:  5'- aACAugUCgaaUCCGUGCGCCGAU-UCGGg -3'
miRNA:   3'- -UGUugGGa--AGGCGUGUGGUUGuAGCU- -5'
10300 5' -52 NC_002687.1 + 169874 0.66 0.998475
Target:  5'- -uGACCCcUUCGCcCGCaGGCGUCGAa -3'
miRNA:   3'- ugUUGGGaAGGCGuGUGgUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 260561 0.66 0.998306
Target:  5'- cGCAGCCUgucucucggccaacgUUUCGCACGCCAuugGCAUa-- -3'
miRNA:   3'- -UGUUGGG---------------AAGGCGUGUGGU---UGUAgcu -5'
10300 5' -52 NC_002687.1 + 278029 0.66 0.998185
Target:  5'- cACAACaaaUUCUGcCACACCGucuGCAUCGu -3'
miRNA:   3'- -UGUUGgg-AAGGC-GUGUGGU---UGUAGCu -5'
10300 5' -52 NC_002687.1 + 46234 0.67 0.99785
Target:  5'- aACGACCCaggccugUCuCGUACcuGCCGACGUCu- -3'
miRNA:   3'- -UGUUGGGa------AG-GCGUG--UGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 7555 0.67 0.997464
Target:  5'- ----gCCUUCCGC-CACCGuCGUCGu -3'
miRNA:   3'- uguugGGAAGGCGuGUGGUuGUAGCu -5'
10300 5' -52 NC_002687.1 + 169798 0.67 0.997464
Target:  5'- cCGugUCguggCCG-ACGCCGACGUCGAc -3'
miRNA:   3'- uGUugGGaa--GGCgUGUGGUUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.