Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 43249 | 1.13 | 0.045644 |
Target: 5'- aCUUAGCAACAUCAAGUACGACACAUCa -3' miRNA: 3'- -GAAUCGUUGUAGUUCAUGCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 115560 | 0.81 | 0.951335 |
Target: 5'- -aUGGCgGGCGUCGAGUACGACcccggugGCAUCg -3' miRNA: 3'- gaAUCG-UUGUAGUUCAUGCUG-------UGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 278610 | 0.76 | 0.996194 |
Target: 5'- -aUGGCAACGUCGAGUcccuaccCGACACGg- -3' miRNA: 3'- gaAUCGUUGUAGUUCAu------GCUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 266412 | 0.74 | 0.99953 |
Target: 5'- --aGGCcggGGCAUCAcccaGGUACGAgACAUCa -3' miRNA: 3'- gaaUCG---UUGUAGU----UCAUGCUgUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 168173 | 0.74 | 0.99953 |
Target: 5'- gUUGGUggUA---GGUACGACACGUCa -3' miRNA: 3'- gAAUCGuuGUaguUCAUGCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 110257 | 0.73 | 0.999702 |
Target: 5'- --cGGCGACAUCAAGccCGACaACAUUc -3' miRNA: 3'- gaaUCGUUGUAGUUCauGCUG-UGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 147766 | 0.73 | 0.999702 |
Target: 5'- -aUGGCGAUAuuuaggauauUCGAGUGCGACAgGUa -3' miRNA: 3'- gaAUCGUUGU----------AGUUCAUGCUGUgUAg -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 167548 | 0.73 | 0.999817 |
Target: 5'- --cGGCAACGUCGGGccuccaACGACGCAc- -3' miRNA: 3'- gaaUCGUUGUAGUUCa-----UGCUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 164329 | 0.72 | 0.99989 |
Target: 5'- -aUGGCGACAcgGAGUACGAgACAg- -3' miRNA: 3'- gaAUCGUUGUagUUCAUGCUgUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 90194 | 0.72 | 0.999936 |
Target: 5'- --gAGCGACGUCGgcgAGUGCGACGa--- -3' miRNA: 3'- gaaUCGUUGUAGU---UCAUGCUGUguag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 315883 | 0.72 | 0.999952 |
Target: 5'- aUUGGUAGCAUCGacggggagGGgccCGACGCGUCc -3' miRNA: 3'- gAAUCGUUGUAGU--------UCau-GCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 282032 | 0.72 | 0.999964 |
Target: 5'- --aAGCAgaACA-CGAGUACGAgGCAUUg -3' miRNA: 3'- gaaUCGU--UGUaGUUCAUGCUgUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 301806 | 0.71 | 0.999981 |
Target: 5'- cCUUAGC-ACGUCGAGaACGcACACGa- -3' miRNA: 3'- -GAAUCGuUGUAGUUCaUGC-UGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 138317 | 0.71 | 0.999986 |
Target: 5'- --aGGCcGCGUCGGGUACGAa--GUCg -3' miRNA: 3'- gaaUCGuUGUAGUUCAUGCUgugUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 142937 | 0.7 | 0.999993 |
Target: 5'- -aUGGCcauccACAUCGAGUACGACGa--- -3' miRNA: 3'- gaAUCGu----UGUAGUUCAUGCUGUguag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 97973 | 0.68 | 1 |
Target: 5'- --cGGC-ACGUCAucacuGUACGGCGuCAUCc -3' miRNA: 3'- gaaUCGuUGUAGUu----CAUGCUGU-GUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 69222 | 0.68 | 1 |
Target: 5'- -gUGGCAGCAUUGGuGUugGuACACAagUCg -3' miRNA: 3'- gaAUCGUUGUAGUU-CAugC-UGUGU--AG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 66768 | 0.68 | 1 |
Target: 5'- -gUAGguAUGUCAAGUGCgGGgAUAUCg -3' miRNA: 3'- gaAUCguUGUAGUUCAUG-CUgUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 253521 | 0.66 | 1 |
Target: 5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3' miRNA: 3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 59041 | 0.67 | 1 |
Target: 5'- -aUAGCAACaAUCA---GCGugAUAUCa -3' miRNA: 3'- gaAUCGUUG-UAGUucaUGCugUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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