miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 278610 0.76 0.996194
Target:  5'- -aUGGCAACGUCGAGUcccuaccCGACACGg- -3'
miRNA:   3'- gaAUCGUUGUAGUUCAu------GCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 253402 0.67 1
Target:  5'- --cGGcCGGCAggGAGaACGGCGCGUCa -3'
miRNA:   3'- gaaUC-GUUGUagUUCaUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 164286 0.67 1
Target:  5'- -gUGGCGGCAUCGgcaccGGcacCGGCAUGUCg -3'
miRNA:   3'- gaAUCGUUGUAGU-----UCau-GCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 253521 0.66 1
Target:  5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3'
miRNA:   3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 167548 0.73 0.999817
Target:  5'- --cGGCAACGUCGGGccuccaACGACGCAc- -3'
miRNA:   3'- gaaUCGUUGUAGUUCa-----UGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 281931 0.69 1
Target:  5'- -gUGGCAGCAUCGGucGCGGCAgGa- -3'
miRNA:   3'- gaAUCGUUGUAGUUcaUGCUGUgUag -5'
10301 3' -44.3 NC_002687.1 + 61055 0.69 1
Target:  5'- ---uGCcGCAUCAuggGGcACGACGCGUCc -3'
miRNA:   3'- gaauCGuUGUAGU---UCaUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 122053 0.68 1
Target:  5'- uCUUGGaCAAgAUCAAggagguGUACGACGCGa- -3'
miRNA:   3'- -GAAUC-GUUgUAGUU------CAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 42857 0.68 1
Target:  5'- ----cCGGCAUgAAGUACGACGC-UCu -3'
miRNA:   3'- gaaucGUUGUAgUUCAUGCUGUGuAG- -5'
10301 3' -44.3 NC_002687.1 + 35804 0.67 1
Target:  5'- gCUUAGCGuACAUCcGAGUGCG-CGCc-- -3'
miRNA:   3'- -GAAUCGU-UGUAG-UUCAUGCuGUGuag -5'
10301 3' -44.3 NC_002687.1 + 330596 0.68 1
Target:  5'- -gUGGCGAU-UCAcGUACGugGCAUg -3'
miRNA:   3'- gaAUCGUUGuAGUuCAUGCugUGUAg -5'
10301 3' -44.3 NC_002687.1 + 117778 0.68 1
Target:  5'- uCUUu-CAACG-CAGGUGCGGCAcCGUCg -3'
miRNA:   3'- -GAAucGUUGUaGUUCAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 266412 0.74 0.99953
Target:  5'- --aGGCcggGGCAUCAcccaGGUACGAgACAUCa -3'
miRNA:   3'- gaaUCG---UUGUAGU----UCAUGCUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 91193 0.67 1
Target:  5'- --cAGCAACAUCAGcaGCGAgUACAUg -3'
miRNA:   3'- gaaUCGUUGUAGUUcaUGCU-GUGUAg -5'
10301 3' -44.3 NC_002687.1 + 110257 0.73 0.999702
Target:  5'- --cGGCGACAUCAAGccCGACaACAUUc -3'
miRNA:   3'- gaaUCGUUGUAGUUCauGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 258187 0.68 1
Target:  5'- --gAGCAAugcCGUCAAGUAC-ACACAa- -3'
miRNA:   3'- gaaUCGUU---GUAGUUCAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 95205 0.67 1
Target:  5'- --aAGCGACAUCGuucAGUGCugugGACGgAUCc -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUG----CUGUgUAG- -5'
10301 3' -44.3 NC_002687.1 + 230015 0.67 1
Target:  5'- ---cGCAACAcgacUUAGuGUGCGACACAg- -3'
miRNA:   3'- gaauCGUUGU----AGUU-CAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 147766 0.73 0.999702
Target:  5'- -aUGGCGAUAuuuaggauauUCGAGUGCGACAgGUa -3'
miRNA:   3'- gaAUCGUUGU----------AGUUCAUGCUGUgUAg -5'
10301 3' -44.3 NC_002687.1 + 272266 0.69 1
Target:  5'- --cGGCGuCAUCGacggucaggggauAGUACGACACAc- -3'
miRNA:   3'- gaaUCGUuGUAGU-------------UCAUGCUGUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.