miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 4349 0.67 1
Target:  5'- aUUGGUAGCGUCG-----GACACGUCa -3'
miRNA:   3'- gAAUCGUUGUAGUucaugCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 11418 0.66 1
Target:  5'- -aUGGCgGGCGUUGuguguGGUGCGGCGCAa- -3'
miRNA:   3'- gaAUCG-UUGUAGU-----UCAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 20447 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 32410 0.67 1
Target:  5'- --gGGCGcggucGCuuUCAGGUGCGACACuugCg -3'
miRNA:   3'- gaaUCGU-----UGu-AGUUCAUGCUGUGua-G- -5'
10301 3' -44.3 NC_002687.1 + 34738 0.67 1
Target:  5'- gCUUAGCcauuGCGUCAuacaauaGGUuaGCGGCgGCGUCa -3'
miRNA:   3'- -GAAUCGu---UGUAGU-------UCA--UGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 35804 0.67 1
Target:  5'- gCUUAGCGuACAUCcGAGUGCG-CGCc-- -3'
miRNA:   3'- -GAAUCGU-UGUAG-UUCAUGCuGUGuag -5'
10301 3' -44.3 NC_002687.1 + 42857 0.68 1
Target:  5'- ----cCGGCAUgAAGUACGACGC-UCu -3'
miRNA:   3'- gaaucGUUGUAgUUCAUGCUGUGuAG- -5'
10301 3' -44.3 NC_002687.1 + 43249 1.13 0.045644
Target:  5'- aCUUAGCAACAUCAAGUACGACACAUCa -3'
miRNA:   3'- -GAAUCGUUGUAGUUCAUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 59041 0.67 1
Target:  5'- -aUAGCAACaAUCA---GCGugAUAUCa -3'
miRNA:   3'- gaAUCGUUG-UAGUucaUGCugUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 60976 0.67 1
Target:  5'- uCUgcGCGGCAUCAAGUacACGAaCAaauUCg -3'
miRNA:   3'- -GAauCGUUGUAGUUCA--UGCU-GUgu-AG- -5'
10301 3' -44.3 NC_002687.1 + 61055 0.69 1
Target:  5'- ---uGCcGCAUCAuggGGcACGACGCGUCc -3'
miRNA:   3'- gaauCGuUGUAGU---UCaUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 62540 0.66 1
Target:  5'- --aGGCAuACAUCAuggguGUGCGugACGa- -3'
miRNA:   3'- gaaUCGU-UGUAGUu----CAUGCugUGUag -5'
10301 3' -44.3 NC_002687.1 + 66768 0.68 1
Target:  5'- -gUAGguAUGUCAAGUGCgGGgAUAUCg -3'
miRNA:   3'- gaAUCguUGUAGUUCAUG-CUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 69222 0.68 1
Target:  5'- -gUGGCAGCAUUGGuGUugGuACACAagUCg -3'
miRNA:   3'- gaAUCGUUGUAGUU-CAugC-UGUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 71042 0.66 1
Target:  5'- -gUAGCGACAUCAAaUACcACaaccuuGCAUCg -3'
miRNA:   3'- gaAUCGUUGUAGUUcAUGcUG------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 71939 0.67 1
Target:  5'- --gGGgAGCGUCAGGUACuGACcagaacuCAUCg -3'
miRNA:   3'- gaaUCgUUGUAGUUCAUG-CUGu------GUAG- -5'
10301 3' -44.3 NC_002687.1 + 72513 0.67 1
Target:  5'- uCUUGGCAucGCuAUCAA--GCGGCACAg- -3'
miRNA:   3'- -GAAUCGU--UG-UAGUUcaUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 90194 0.72 0.999936
Target:  5'- --gAGCGACGUCGgcgAGUGCGACGa--- -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUGCUGUguag -5'
10301 3' -44.3 NC_002687.1 + 91139 0.67 1
Target:  5'- ---cGCAcaggGCAagGGGUACGACcGCAUCu -3'
miRNA:   3'- gaauCGU----UGUagUUCAUGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 91193 0.67 1
Target:  5'- --cAGCAACAUCAGcaGCGAgUACAUg -3'
miRNA:   3'- gaaUCGUUGUAGUUcaUGCU-GUGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.