Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 330596 | 0.68 | 1 |
Target: 5'- -gUGGCGAU-UCAcGUACGugGCAUg -3' miRNA: 3'- gaAUCGUUGuAGUuCAUGCugUGUAg -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 315883 | 0.72 | 0.999952 |
Target: 5'- aUUGGUAGCAUCGacggggagGGgccCGACGCGUCc -3' miRNA: 3'- gAAUCGUUGUAGU--------UCau-GCUGUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 301806 | 0.71 | 0.999981 |
Target: 5'- cCUUAGC-ACGUCGAGaACGcACACGa- -3' miRNA: 3'- -GAAUCGuUGUAGUUCaUGC-UGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 295595 | 0.69 | 1 |
Target: 5'- --cGGCGauGCAUCGAGUACGccCACGa- -3' miRNA: 3'- gaaUCGU--UGUAGUUCAUGCu-GUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 282032 | 0.72 | 0.999964 |
Target: 5'- --aAGCAgaACA-CGAGUACGAgGCAUUg -3' miRNA: 3'- gaaUCGU--UGUaGUUCAUGCUgUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 281931 | 0.69 | 1 |
Target: 5'- -gUGGCAGCAUCGGucGCGGCAgGa- -3' miRNA: 3'- gaAUCGUUGUAGUUcaUGCUGUgUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 278610 | 0.76 | 0.996194 |
Target: 5'- -aUGGCAACGUCGAGUcccuaccCGACACGg- -3' miRNA: 3'- gaAUCGUUGUAGUUCAu------GCUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 278589 | 0.69 | 1 |
Target: 5'- gUUAGCcuACGUCAAcgACGAUAUGUCa -3' miRNA: 3'- gAAUCGu-UGUAGUUcaUGCUGUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 272266 | 0.69 | 1 |
Target: 5'- --cGGCGuCAUCGacggucaggggauAGUACGACACAc- -3' miRNA: 3'- gaaUCGUuGUAGU-------------UCAUGCUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 268464 | 0.67 | 1 |
Target: 5'- --cAGCAGCugGUCGcggAGUACGugagcCACGUCa -3' miRNA: 3'- gaaUCGUUG--UAGU---UCAUGCu----GUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 266412 | 0.74 | 0.99953 |
Target: 5'- --aGGCcggGGCAUCAcccaGGUACGAgACAUCa -3' miRNA: 3'- gaaUCG---UUGUAGU----UCAUGCUgUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 259245 | 0.69 | 1 |
Target: 5'- --aAGCGugAUCAAGgaugacauuugACGACGCAa- -3' miRNA: 3'- gaaUCGUugUAGUUCa----------UGCUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 258187 | 0.68 | 1 |
Target: 5'- --gAGCAAugcCGUCAAGUAC-ACACAa- -3' miRNA: 3'- gaaUCGUU---GUAGUUCAUGcUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 253521 | 0.66 | 1 |
Target: 5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3' miRNA: 3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 253402 | 0.67 | 1 |
Target: 5'- --cGGcCGGCAggGAGaACGGCGCGUCa -3' miRNA: 3'- gaaUC-GUUGUagUUCaUGCUGUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 249328 | 0.66 | 1 |
Target: 5'- -cUGGCGguggacucaaaGCAUCGaaggaggGGUACGAUAcCAUCa -3' miRNA: 3'- gaAUCGU-----------UGUAGU-------UCAUGCUGU-GUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 240017 | 0.67 | 1 |
Target: 5'- gCUUAGCGGgAUCuuuGAGcACGucguACACAUCg -3' miRNA: 3'- -GAAUCGUUgUAG---UUCaUGC----UGUGUAG- -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 230015 | 0.67 | 1 |
Target: 5'- ---cGCAACAcgacUUAGuGUGCGACACAg- -3' miRNA: 3'- gaauCGUUGU----AGUU-CAUGCUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 221873 | 0.68 | 1 |
Target: 5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3' miRNA: 3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5' |
|||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 219339 | 0.69 | 1 |
Target: 5'- ---cGC-ACAcCAGGUACGAUACAUa -3' miRNA: 3'- gaauCGuUGUaGUUCAUGCUGUGUAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home