miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 11418 0.66 1
Target:  5'- -aUGGCgGGCGUUGuguguGGUGCGGCGCAa- -3'
miRNA:   3'- gaAUCG-UUGUAGU-----UCAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 253521 0.66 1
Target:  5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3'
miRNA:   3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 62540 0.66 1
Target:  5'- --aGGCAuACAUCAuggguGUGCGugACGa- -3'
miRNA:   3'- gaaUCGU-UGUAGUu----CAUGCugUGUag -5'
10301 3' -44.3 NC_002687.1 + 133171 0.66 1
Target:  5'- ---uGUAGCGUCGguAGUACGGCAgAa- -3'
miRNA:   3'- gaauCGUUGUAGU--UCAUGCUGUgUag -5'
10301 3' -44.3 NC_002687.1 + 71042 0.66 1
Target:  5'- -gUAGCGACAUCAAaUACcACaaccuuGCAUCg -3'
miRNA:   3'- gaAUCGUUGUAGUUcAUGcUG------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 207448 0.66 1
Target:  5'- --cGGUc-CAUCGAGagaaacagGCGGCACAUCg -3'
miRNA:   3'- gaaUCGuuGUAGUUCa-------UGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 146315 0.66 1
Target:  5'- ---uGCAGCucgaacUCAAGUACGGugacaacaucccCACGUCg -3'
miRNA:   3'- gaauCGUUGu-----AGUUCAUGCU------------GUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 103564 0.66 1
Target:  5'- --cGGCAACAUUGGagcGUACGAUAagGUCa -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGCUGUg-UAG- -5'
10301 3' -44.3 NC_002687.1 + 218857 0.66 1
Target:  5'- --cAGCAGCAUCuuucGUAcCGACGCu-- -3'
miRNA:   3'- gaaUCGUUGUAGuu--CAU-GCUGUGuag -5'
10301 3' -44.3 NC_002687.1 + 198576 0.66 1
Target:  5'- ----aCAACAUCGGGUACGuuuACACGg- -3'
miRNA:   3'- gaaucGUUGUAGUUCAUGC---UGUGUag -5'
10301 3' -44.3 NC_002687.1 + 249328 0.66 1
Target:  5'- -cUGGCGguggacucaaaGCAUCGaaggaggGGUACGAUAcCAUCa -3'
miRNA:   3'- gaAUCGU-----------UGUAGU-------UCAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 119824 0.66 1
Target:  5'- --cAGCGACAcCAucacCGACGCGUCu -3'
miRNA:   3'- gaaUCGUUGUaGUucauGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 175647 0.66 1
Target:  5'- uCUUGG-AACGUCAcucgugucaAGUucGCGACGCAUg -3'
miRNA:   3'- -GAAUCgUUGUAGU---------UCA--UGCUGUGUAg -5'
10301 3' -44.3 NC_002687.1 + 230015 0.67 1
Target:  5'- ---cGCAACAcgacUUAGuGUGCGACACAg- -3'
miRNA:   3'- gaauCGUUGU----AGUU-CAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 91139 0.67 1
Target:  5'- ---cGCAcaggGCAagGGGUACGACcGCAUCu -3'
miRNA:   3'- gaauCGU----UGUagUUCAUGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 240017 0.67 1
Target:  5'- gCUUAGCGGgAUCuuuGAGcACGucguACACAUCg -3'
miRNA:   3'- -GAAUCGUUgUAG---UUCaUGC----UGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 141862 0.67 1
Target:  5'- ---cGaCAACGUCAuGUGCGACugccacuACGUCa -3'
miRNA:   3'- gaauC-GUUGUAGUuCAUGCUG-------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 214797 0.67 1
Target:  5'- --gGGCcACAUCGAgcugaaucuGUGCGACGCuUCc -3'
miRNA:   3'- gaaUCGuUGUAGUU---------CAUGCUGUGuAG- -5'
10301 3' -44.3 NC_002687.1 + 268464 0.67 1
Target:  5'- --cAGCAGCugGUCGcggAGUACGugagcCACGUCa -3'
miRNA:   3'- gaaUCGUUG--UAGU---UCAUGCu----GUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 59041 0.67 1
Target:  5'- -aUAGCAACaAUCA---GCGugAUAUCa -3'
miRNA:   3'- gaAUCGUUG-UAGUucaUGCugUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.