miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 35804 0.67 1
Target:  5'- gCUUAGCGuACAUCcGAGUGCG-CGCc-- -3'
miRNA:   3'- -GAAUCGU-UGUAG-UUCAUGCuGUGuag -5'
10301 3' -44.3 NC_002687.1 + 91193 0.67 1
Target:  5'- --cAGCAACAUCAGcaGCGAgUACAUg -3'
miRNA:   3'- gaaUCGUUGUAGUUcaUGCU-GUGUAg -5'
10301 3' -44.3 NC_002687.1 + 214797 0.67 1
Target:  5'- --gGGCcACAUCGAgcugaaucuGUGCGACGCuUCc -3'
miRNA:   3'- gaaUCGuUGUAGUU---------CAUGCUGUGuAG- -5'
10301 3' -44.3 NC_002687.1 + 60976 0.67 1
Target:  5'- uCUgcGCGGCAUCAAGUacACGAaCAaauUCg -3'
miRNA:   3'- -GAauCGUUGUAGUUCA--UGCU-GUgu-AG- -5'
10301 3' -44.3 NC_002687.1 + 240017 0.67 1
Target:  5'- gCUUAGCGGgAUCuuuGAGcACGucguACACAUCg -3'
miRNA:   3'- -GAAUCGUUgUAG---UUCaUGC----UGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 72513 0.67 1
Target:  5'- uCUUGGCAucGCuAUCAA--GCGGCACAg- -3'
miRNA:   3'- -GAAUCGU--UG-UAGUUcaUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 59041 0.67 1
Target:  5'- -aUAGCAACaAUCA---GCGugAUAUCa -3'
miRNA:   3'- gaAUCGUUG-UAGUucaUGCugUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 34738 0.67 1
Target:  5'- gCUUAGCcauuGCGUCAuacaauaGGUuaGCGGCgGCGUCa -3'
miRNA:   3'- -GAAUCGu---UGUAGU-------UCA--UGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 32410 0.67 1
Target:  5'- --gGGCGcggucGCuuUCAGGUGCGACACuugCg -3'
miRNA:   3'- gaaUCGU-----UGu-AGUUCAUGCUGUGua-G- -5'
10301 3' -44.3 NC_002687.1 + 71939 0.67 1
Target:  5'- --gGGgAGCGUCAGGUACuGACcagaacuCAUCg -3'
miRNA:   3'- gaaUCgUUGUAGUUCAUG-CUGu------GUAG- -5'
10301 3' -44.3 NC_002687.1 + 4349 0.67 1
Target:  5'- aUUGGUAGCGUCG-----GACACGUCa -3'
miRNA:   3'- gAAUCGUUGUAGUucaugCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 268464 0.67 1
Target:  5'- --cAGCAGCugGUCGcggAGUACGugagcCACGUCa -3'
miRNA:   3'- gaaUCGUUG--UAGU---UCAUGCu----GUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 167288 0.67 1
Target:  5'- --cAGCGACAgcuGGUcggagaACGACAUGUCg -3'
miRNA:   3'- gaaUCGUUGUaguUCA------UGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 66768 0.68 1
Target:  5'- -gUAGguAUGUCAAGUGCgGGgAUAUCg -3'
miRNA:   3'- gaAUCguUGUAGUUCAUG-CUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 103759 0.68 1
Target:  5'- cCUUGGCGaagGCAUCGAgGUACaggucgGACACAa- -3'
miRNA:   3'- -GAAUCGU---UGUAGUU-CAUG------CUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 20447 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 97973 0.68 1
Target:  5'- --cGGC-ACGUCAucacuGUACGGCGuCAUCc -3'
miRNA:   3'- gaaUCGuUGUAGUu----CAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 330596 0.68 1
Target:  5'- -gUGGCGAU-UCAcGUACGugGCAUg -3'
miRNA:   3'- gaAUCGUUGuAGUuCAUGCugUGUAg -5'
10301 3' -44.3 NC_002687.1 + 151217 0.68 1
Target:  5'- --aAGCAGCcUCGAGcgcCGACACAa- -3'
miRNA:   3'- gaaUCGUUGuAGUUCau-GCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 69222 0.68 1
Target:  5'- -gUGGCAGCAUUGGuGUugGuACACAagUCg -3'
miRNA:   3'- gaAUCGUUGUAGUU-CAugC-UGUGU--AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.