miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 95205 0.67 1
Target:  5'- --aAGCGACAUCGuucAGUGCugugGACGgAUCc -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUG----CUGUgUAG- -5'
10301 3' -44.3 NC_002687.1 + 97973 0.68 1
Target:  5'- --cGGC-ACGUCAucacuGUACGGCGuCAUCc -3'
miRNA:   3'- gaaUCGuUGUAGUu----CAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 103564 0.66 1
Target:  5'- --cGGCAACAUUGGagcGUACGAUAagGUCa -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGCUGUg-UAG- -5'
10301 3' -44.3 NC_002687.1 + 103759 0.68 1
Target:  5'- cCUUGGCGaagGCAUCGAgGUACaggucgGACACAa- -3'
miRNA:   3'- -GAAUCGU---UGUAGUU-CAUG------CUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 110257 0.73 0.999702
Target:  5'- --cGGCGACAUCAAGccCGACaACAUUc -3'
miRNA:   3'- gaaUCGUUGUAGUUCauGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 115560 0.81 0.951335
Target:  5'- -aUGGCgGGCGUCGAGUACGACcccggugGCAUCg -3'
miRNA:   3'- gaAUCG-UUGUAGUUCAUGCUG-------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 117778 0.68 1
Target:  5'- uCUUu-CAACG-CAGGUGCGGCAcCGUCg -3'
miRNA:   3'- -GAAucGUUGUaGUUCAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 119824 0.66 1
Target:  5'- --cAGCGACAcCAucacCGACGCGUCu -3'
miRNA:   3'- gaaUCGUUGUaGUucauGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 122053 0.68 1
Target:  5'- uCUUGGaCAAgAUCAAggagguGUACGACGCGa- -3'
miRNA:   3'- -GAAUC-GUUgUAGUU------CAUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 130833 0.67 1
Target:  5'- ---uGgGACGUCAAGgACGACAUAg- -3'
miRNA:   3'- gaauCgUUGUAGUUCaUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 133171 0.66 1
Target:  5'- ---uGUAGCGUCGguAGUACGGCAgAa- -3'
miRNA:   3'- gaauCGUUGUAGU--UCAUGCUGUgUag -5'
10301 3' -44.3 NC_002687.1 + 138317 0.71 0.999986
Target:  5'- --aGGCcGCGUCGGGUACGAa--GUCg -3'
miRNA:   3'- gaaUCGuUGUAGUUCAUGCUgugUAG- -5'
10301 3' -44.3 NC_002687.1 + 141862 0.67 1
Target:  5'- ---cGaCAACGUCAuGUGCGACugccacuACGUCa -3'
miRNA:   3'- gaauC-GUUGUAGUuCAUGCUG-------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 142937 0.7 0.999993
Target:  5'- -aUGGCcauccACAUCGAGUACGACGa--- -3'
miRNA:   3'- gaAUCGu----UGUAGUUCAUGCUGUguag -5'
10301 3' -44.3 NC_002687.1 + 146315 0.66 1
Target:  5'- ---uGCAGCucgaacUCAAGUACGGugacaacaucccCACGUCg -3'
miRNA:   3'- gaauCGUUGu-----AGUUCAUGCU------------GUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 147766 0.73 0.999702
Target:  5'- -aUGGCGAUAuuuaggauauUCGAGUGCGACAgGUa -3'
miRNA:   3'- gaAUCGUUGU----------AGUUCAUGCUGUgUAg -5'
10301 3' -44.3 NC_002687.1 + 151217 0.68 1
Target:  5'- --aAGCAGCcUCGAGcgcCGACACAa- -3'
miRNA:   3'- gaaUCGUUGuAGUUCau-GCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 164286 0.67 1
Target:  5'- -gUGGCGGCAUCGgcaccGGcacCGGCAUGUCg -3'
miRNA:   3'- gaAUCGUUGUAGU-----UCau-GCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 164329 0.72 0.99989
Target:  5'- -aUGGCGACAcgGAGUACGAgACAg- -3'
miRNA:   3'- gaAUCGUUGUagUUCAUGCUgUGUag -5'
10301 3' -44.3 NC_002687.1 + 167288 0.67 1
Target:  5'- --cAGCGACAgcuGGUcggagaACGACAUGUCg -3'
miRNA:   3'- gaaUCGUUGUaguUCA------UGCUGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.