miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 35804 0.67 1
Target:  5'- gCUUAGCGuACAUCcGAGUGCG-CGCc-- -3'
miRNA:   3'- -GAAUCGU-UGUAG-UUCAUGCuGUGuag -5'
10301 3' -44.3 NC_002687.1 + 151217 0.68 1
Target:  5'- --aAGCAGCcUCGAGcgcCGACACAa- -3'
miRNA:   3'- gaaUCGUUGuAGUUCau-GCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 103564 0.66 1
Target:  5'- --cGGCAACAUUGGagcGUACGAUAagGUCa -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGCUGUg-UAG- -5'
10301 3' -44.3 NC_002687.1 + 175647 0.66 1
Target:  5'- uCUUGG-AACGUCAcucgugucaAGUucGCGACGCAUg -3'
miRNA:   3'- -GAAUCgUUGUAGU---------UCA--UGCUGUGUAg -5'
10301 3' -44.3 NC_002687.1 + 164286 0.67 1
Target:  5'- -gUGGCGGCAUCGgcaccGGcacCGGCAUGUCg -3'
miRNA:   3'- gaAUCGUUGUAGU-----UCau-GCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 42857 0.68 1
Target:  5'- ----cCGGCAUgAAGUACGACGC-UCu -3'
miRNA:   3'- gaaucGUUGUAgUUCAUGCUGUGuAG- -5'
10301 3' -44.3 NC_002687.1 + 71042 0.66 1
Target:  5'- -gUAGCGACAUCAAaUACcACaaccuuGCAUCg -3'
miRNA:   3'- gaAUCGUUGUAGUUcAUGcUG------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 117778 0.68 1
Target:  5'- uCUUu-CAACG-CAGGUGCGGCAcCGUCg -3'
miRNA:   3'- -GAAucGUUGUaGUUCAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 258187 0.68 1
Target:  5'- --gAGCAAugcCGUCAAGUAC-ACACAa- -3'
miRNA:   3'- gaaUCGUU---GUAGUUCAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 91139 0.67 1
Target:  5'- ---cGCAcaggGCAagGGGUACGACcGCAUCu -3'
miRNA:   3'- gaauCGU----UGUagUUCAUGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 218857 0.66 1
Target:  5'- --cAGCAGCAUCuuucGUAcCGACGCu-- -3'
miRNA:   3'- gaaUCGUUGUAGuu--CAU-GCUGUGuag -5'
10301 3' -44.3 NC_002687.1 + 95205 0.67 1
Target:  5'- --aAGCGACAUCGuucAGUGCugugGACGgAUCc -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUG----CUGUgUAG- -5'
10301 3' -44.3 NC_002687.1 + 330596 0.68 1
Target:  5'- -gUGGCGAU-UCAcGUACGugGCAUg -3'
miRNA:   3'- gaAUCGUUGuAGUuCAUGCugUGUAg -5'
10301 3' -44.3 NC_002687.1 + 60976 0.67 1
Target:  5'- uCUgcGCGGCAUCAAGUacACGAaCAaauUCg -3'
miRNA:   3'- -GAauCGUUGUAGUUCA--UGCU-GUgu-AG- -5'
10301 3' -44.3 NC_002687.1 + 198576 0.66 1
Target:  5'- ----aCAACAUCGGGUACGuuuACACGg- -3'
miRNA:   3'- gaaucGUUGUAGUUCAUGC---UGUGUag -5'
10301 3' -44.3 NC_002687.1 + 253521 0.66 1
Target:  5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3'
miRNA:   3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 20447 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 168173 0.74 0.99953
Target:  5'- gUUGGUggUA---GGUACGACACGUCa -3'
miRNA:   3'- gAAUCGuuGUaguUCAUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 90194 0.72 0.999936
Target:  5'- --gAGCGACGUCGgcgAGUGCGACGa--- -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUGCUGUguag -5'
10301 3' -44.3 NC_002687.1 + 164329 0.72 0.99989
Target:  5'- -aUGGCGACAcgGAGUACGAgACAg- -3'
miRNA:   3'- gaAUCGUUGUagUUCAUGCUgUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.