miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 43249 1.13 0.045644
Target:  5'- aCUUAGCAACAUCAAGUACGACACAUCa -3'
miRNA:   3'- -GAAUCGUUGUAGUUCAUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 115560 0.81 0.951335
Target:  5'- -aUGGCgGGCGUCGAGUACGACcccggugGCAUCg -3'
miRNA:   3'- gaAUCG-UUGUAGUUCAUGCUG-------UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 278610 0.76 0.996194
Target:  5'- -aUGGCAACGUCGAGUcccuaccCGACACGg- -3'
miRNA:   3'- gaAUCGUUGUAGUUCAu------GCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 168173 0.74 0.99953
Target:  5'- gUUGGUggUA---GGUACGACACGUCa -3'
miRNA:   3'- gAAUCGuuGUaguUCAUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 266412 0.74 0.99953
Target:  5'- --aGGCcggGGCAUCAcccaGGUACGAgACAUCa -3'
miRNA:   3'- gaaUCG---UUGUAGU----UCAUGCUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 147766 0.73 0.999702
Target:  5'- -aUGGCGAUAuuuaggauauUCGAGUGCGACAgGUa -3'
miRNA:   3'- gaAUCGUUGU----------AGUUCAUGCUGUgUAg -5'
10301 3' -44.3 NC_002687.1 + 110257 0.73 0.999702
Target:  5'- --cGGCGACAUCAAGccCGACaACAUUc -3'
miRNA:   3'- gaaUCGUUGUAGUUCauGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 167548 0.73 0.999817
Target:  5'- --cGGCAACGUCGGGccuccaACGACGCAc- -3'
miRNA:   3'- gaaUCGUUGUAGUUCa-----UGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 90194 0.72 0.999936
Target:  5'- --gAGCGACGUCGgcgAGUGCGACGa--- -3'
miRNA:   3'- gaaUCGUUGUAGU---UCAUGCUGUguag -5'
10301 3' -44.3 NC_002687.1 + 164329 0.72 0.99989
Target:  5'- -aUGGCGACAcgGAGUACGAgACAg- -3'
miRNA:   3'- gaAUCGUUGUagUUCAUGCUgUGUag -5'
10301 3' -44.3 NC_002687.1 + 282032 0.72 0.999964
Target:  5'- --aAGCAgaACA-CGAGUACGAgGCAUUg -3'
miRNA:   3'- gaaUCGU--UGUaGUUCAUGCUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 315883 0.72 0.999952
Target:  5'- aUUGGUAGCAUCGacggggagGGgccCGACGCGUCc -3'
miRNA:   3'- gAAUCGUUGUAGU--------UCau-GCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 138317 0.71 0.999986
Target:  5'- --aGGCcGCGUCGGGUACGAa--GUCg -3'
miRNA:   3'- gaaUCGuUGUAGUUCAUGCUgugUAG- -5'
10301 3' -44.3 NC_002687.1 + 301806 0.71 0.999981
Target:  5'- cCUUAGC-ACGUCGAGaACGcACACGa- -3'
miRNA:   3'- -GAAUCGuUGUAGUUCaUGC-UGUGUag -5'
10301 3' -44.3 NC_002687.1 + 142937 0.7 0.999993
Target:  5'- -aUGGCcauccACAUCGAGUACGACGa--- -3'
miRNA:   3'- gaAUCGu----UGUAGUUCAUGCUGUguag -5'
10301 3' -44.3 NC_002687.1 + 219339 0.69 1
Target:  5'- ---cGC-ACAcCAGGUACGAUACAUa -3'
miRNA:   3'- gaauCGuUGUaGUUCAUGCUGUGUAg -5'
10301 3' -44.3 NC_002687.1 + 278589 0.69 1
Target:  5'- gUUAGCcuACGUCAAcgACGAUAUGUCa -3'
miRNA:   3'- gAAUCGu-UGUAGUUcaUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 281931 0.69 1
Target:  5'- -gUGGCAGCAUCGGucGCGGCAgGa- -3'
miRNA:   3'- gaAUCGUUGUAGUUcaUGCUGUgUag -5'
10301 3' -44.3 NC_002687.1 + 259245 0.69 1
Target:  5'- --aAGCGugAUCAAGgaugacauuugACGACGCAa- -3'
miRNA:   3'- gaaUCGUugUAGUUCa----------UGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 295595 0.69 1
Target:  5'- --cGGCGauGCAUCGAGUACGccCACGa- -3'
miRNA:   3'- gaaUCGU--UGUAGUUCAUGCu-GUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.