Results 1 - 20 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 3' | -46 | NC_002687.1 | + | 50371 | 0.66 | 1 |
Target: 5'- cAACGUAAUACGAUUUAUCGc------ -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 51257 | 0.66 | 1 |
Target: 5'- cAACGUAAUACGAUUUAUCGc------ -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 228012 | 0.66 | 1 |
Target: 5'- uACGUugcAGCACGAUUcagCGUGCUacacaGCAu -3' miRNA: 3'- uUGCA---UUGUGCUAAauaGCACGA-----CGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 180806 | 0.66 | 1 |
Target: 5'- uGCGUAcaACGAggUUGcUCGUGCUGaCAa -3' miRNA: 3'- uUGCAUugUGCUa-AAU-AGCACGAC-GU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 329760 | 0.66 | 1 |
Target: 5'- uGCG-AACACGA----UCGcUGCUGCGc -3' miRNA: 3'- uUGCaUUGUGCUaaauAGC-ACGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 291317 | 0.67 | 0.999999 |
Target: 5'- cAGCGgc-CGCGAggcUGUCGUaGCUGCu -3' miRNA: 3'- -UUGCauuGUGCUaa-AUAGCA-CGACGu -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 132439 | 0.67 | 0.999999 |
Target: 5'- --aGUGGCAUGGU---UCGUGCgGCGa -3' miRNA: 3'- uugCAUUGUGCUAaauAGCACGaCGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 229767 | 0.67 | 0.999998 |
Target: 5'- -gUGUAGCACacuaaGUCGUGUUGCGa -3' miRNA: 3'- uuGCAUUGUGcuaaaUAGCACGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 146237 | 0.67 | 0.999998 |
Target: 5'- uGugGUgGugAUGAggUAcUCGUGCUGCAc -3' miRNA: 3'- -UugCA-UugUGCUaaAU-AGCACGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 180585 | 0.67 | 0.999998 |
Target: 5'- aGGCGU-GCGCGGg--GUCGaGCUGUAa -3' miRNA: 3'- -UUGCAuUGUGCUaaaUAGCaCGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 51386 | 0.68 | 0.999995 |
Target: 5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3' miRNA: 3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 50030 | 0.68 | 0.999995 |
Target: 5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3' miRNA: 3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 259524 | 0.68 | 0.999994 |
Target: 5'- uGACGUGagGCACaagacgAUCGUGUUGCGc -3' miRNA: 3'- -UUGCAU--UGUGcuaaa-UAGCACGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 236700 | 0.68 | 0.999991 |
Target: 5'- aAACGUAgcGCACGGUcu-UCGaggcGCUGCAu -3' miRNA: 3'- -UUGCAU--UGUGCUAaauAGCa---CGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 230807 | 0.68 | 0.999987 |
Target: 5'- --gGU-ACACGGUgagaCGUGCUGCAu -3' miRNA: 3'- uugCAuUGUGCUAaauaGCACGACGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 230615 | 0.69 | 0.999983 |
Target: 5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3' miRNA: 3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 230737 | 0.69 | 0.999983 |
Target: 5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3' miRNA: 3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 230981 | 0.69 | 0.999983 |
Target: 5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3' miRNA: 3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 230132 | 0.69 | 0.999983 |
Target: 5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3' miRNA: 3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5' |
|||||||
10303 | 3' | -46 | NC_002687.1 | + | 229766 | 0.69 | 0.999983 |
Target: 5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3' miRNA: 3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home