miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 3' -46 NC_002687.1 + 50371 0.66 1
Target:  5'- cAACGUAAUACGAUUUAUCGc------ -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5'
10303 3' -46 NC_002687.1 + 51257 0.66 1
Target:  5'- cAACGUAAUACGAUUUAUCGc------ -3'
miRNA:   3'- -UUGCAUUGUGCUAAAUAGCacgacgu -5'
10303 3' -46 NC_002687.1 + 228012 0.66 1
Target:  5'- uACGUugcAGCACGAUUcagCGUGCUacacaGCAu -3'
miRNA:   3'- uUGCA---UUGUGCUAAauaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 180806 0.66 1
Target:  5'- uGCGUAcaACGAggUUGcUCGUGCUGaCAa -3'
miRNA:   3'- uUGCAUugUGCUa-AAU-AGCACGAC-GU- -5'
10303 3' -46 NC_002687.1 + 329760 0.66 1
Target:  5'- uGCG-AACACGA----UCGcUGCUGCGc -3'
miRNA:   3'- uUGCaUUGUGCUaaauAGC-ACGACGU- -5'
10303 3' -46 NC_002687.1 + 291317 0.67 0.999999
Target:  5'- cAGCGgc-CGCGAggcUGUCGUaGCUGCu -3'
miRNA:   3'- -UUGCauuGUGCUaa-AUAGCA-CGACGu -5'
10303 3' -46 NC_002687.1 + 132439 0.67 0.999999
Target:  5'- --aGUGGCAUGGU---UCGUGCgGCGa -3'
miRNA:   3'- uugCAUUGUGCUAaauAGCACGaCGU- -5'
10303 3' -46 NC_002687.1 + 229767 0.67 0.999998
Target:  5'- -gUGUAGCACacuaaGUCGUGUUGCGa -3'
miRNA:   3'- uuGCAUUGUGcuaaaUAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 146237 0.67 0.999998
Target:  5'- uGugGUgGugAUGAggUAcUCGUGCUGCAc -3'
miRNA:   3'- -UugCA-UugUGCUaaAU-AGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 180585 0.67 0.999998
Target:  5'- aGGCGU-GCGCGGg--GUCGaGCUGUAa -3'
miRNA:   3'- -UUGCAuUGUGCUaaaUAGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 51386 0.68 0.999995
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5'
10303 3' -46 NC_002687.1 + 50030 0.68 0.999995
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCu -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGu -5'
10303 3' -46 NC_002687.1 + 259524 0.68 0.999994
Target:  5'- uGACGUGagGCACaagacgAUCGUGUUGCGc -3'
miRNA:   3'- -UUGCAU--UGUGcuaaa-UAGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 236700 0.68 0.999991
Target:  5'- aAACGUAgcGCACGGUcu-UCGaggcGCUGCAu -3'
miRNA:   3'- -UUGCAU--UGUGCUAaauAGCa---CGACGU- -5'
10303 3' -46 NC_002687.1 + 230807 0.68 0.999987
Target:  5'- --gGU-ACACGGUgagaCGUGCUGCAu -3'
miRNA:   3'- uugCAuUGUGCUAaauaGCACGACGU- -5'
10303 3' -46 NC_002687.1 + 230615 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230737 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230981 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230132 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 229766 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.