Results 1 - 20 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 328694 | 0.68 | 0.997086 |
Target: 5'- -uUGCucuCUCACUucgcacUCGUGCUGCAu -3' miRNA: 3'- acACGuc-GAGUGAuuu---AGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 311873 | 0.66 | 0.999178 |
Target: 5'- --cGCcGCUCGCUuccguuGUCGUGUgagGCAg -3' miRNA: 3'- acaCGuCGAGUGAuu----UAGCACGa--CGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 310980 | 0.68 | 0.997086 |
Target: 5'- cGUGCAGCUUACagGGggCGUGaaaccgUGCAg -3' miRNA: 3'- aCACGUCGAGUGa-UUuaGCACg-----ACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 281154 | 0.66 | 0.999454 |
Target: 5'- uUGUGCAcCguaagCACUAGAU--UGCUGCAc -3' miRNA: 3'- -ACACGUcGa----GUGAUUUAgcACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 257352 | 0.67 | 0.998999 |
Target: 5'- gUGUGCAGCaUCGCcgcGAUCGcGaUUGCAg -3' miRNA: 3'- -ACACGUCG-AGUGau-UUAGCaC-GACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231469 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231417 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231347 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231295 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231225 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231173 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231103 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 231051 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230981 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230929 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230859 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230812 | 0.67 | 0.998999 |
Target: 5'- -aUGCAGgUaCACggugAGA-CGUGCUGCAu -3' miRNA: 3'- acACGUCgA-GUGa---UUUaGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230738 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230618 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
|||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 230566 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGCUGAggCGUGCUGgAu -3' miRNA: 3'- acaCGUCGaGUGAUUuaGCACGACgU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home