miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 316035 0.66 0.999598
Target:  5'- gUGCCGauGGUGCCGAugguGCCGguggGGACg-- -3'
miRNA:   3'- -ACGGC--CUACGGCUuu--CGGU----UUUGaag -5'
10306 5' -50.5 NC_002687.1 + 315824 0.7 0.991258
Target:  5'- cGCCGGGUGCCGcc-GCCGcacccGAAgaUCc -3'
miRNA:   3'- aCGGCCUACGGCuuuCGGU-----UUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 308763 0.71 0.977499
Target:  5'- cGCCGGGUgGCUGGuAGGCgCAAGGCUc- -3'
miRNA:   3'- aCGGCCUA-CGGCU-UUCG-GUUUUGAag -5'
10306 5' -50.5 NC_002687.1 + 304468 0.66 0.999502
Target:  5'- gUGCCGGAc-CCGAuacGGUCAcacuauuuaAAACUUCg -3'
miRNA:   3'- -ACGGCCUacGGCUu--UCGGU---------UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 291697 0.68 0.997272
Target:  5'- cUGCUGGGUGUgGgGAAGCUAGGuuuucccuacaauACUUCg -3'
miRNA:   3'- -ACGGCCUACGgC-UUUCGGUUU-------------UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 291563 0.66 0.999743
Target:  5'- aUGCCcaccucacGcGAUGCCuGAAGGCCAAGAg--- -3'
miRNA:   3'- -ACGG--------C-CUACGG-CUUUCGGUUUUgaag -5'
10306 5' -50.5 NC_002687.1 + 291262 0.68 0.996303
Target:  5'- gGCCGacugcacUGCCGAaguGAGCCAGGGCa-- -3'
miRNA:   3'- aCGGCcu-----ACGGCU---UUCGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 282907 0.67 0.999248
Target:  5'- cGCCaGAUGCCG-AGGCgGGggUgUCg -3'
miRNA:   3'- aCGGcCUACGGCuUUCGgUUuuGaAG- -5'
10306 5' -50.5 NC_002687.1 + 280917 0.68 0.996303
Target:  5'- aGCCucagcGAUGCCGggGGCCcguguuGAAGCa-- -3'
miRNA:   3'- aCGGc----CUACGGCuuUCGG------UUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 277131 0.66 0.999743
Target:  5'- aGCCGGGUcGuCCGAuGGCCGccGACg-- -3'
miRNA:   3'- aCGGCCUA-C-GGCUuUCGGUu-UUGaag -5'
10306 5' -50.5 NC_002687.1 + 269770 0.66 0.999386
Target:  5'- cGCCGGAUGCCac---CCGAAAUa-- -3'
miRNA:   3'- aCGGCCUACGGcuuucGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 267132 0.68 0.996303
Target:  5'- uUGCaguauGGGUGCCGAuggAAGCCAu--UUUCu -3'
miRNA:   3'- -ACGg----CCUACGGCU---UUCGGUuuuGAAG- -5'
10306 5' -50.5 NC_002687.1 + 260258 0.67 0.998891
Target:  5'- gGCCGGuguuuCCGGAAGCUAucGCUg- -3'
miRNA:   3'- aCGGCCuac--GGCUUUCGGUuuUGAag -5'
10306 5' -50.5 NC_002687.1 + 259368 0.71 0.979783
Target:  5'- aGCUGGuUGCCGAucGGCCAcGAACaggUCg -3'
miRNA:   3'- aCGGCCuACGGCUu-UCGGU-UUUGa--AG- -5'
10306 5' -50.5 NC_002687.1 + 256245 0.71 0.979783
Target:  5'- cGCUGGAcgGUaCGAAAGCCAucguguGCUUCc -3'
miRNA:   3'- aCGGCCUa-CG-GCUUUCGGUuu----UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 254300 0.68 0.998217
Target:  5'- cGCCGGAauccauugucgagauUGCCGGAGagguGCCcGAACg-- -3'
miRNA:   3'- aCGGCCU---------------ACGGCUUU----CGGuUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 251555 0.71 0.979562
Target:  5'- aGCaCGGugcaagucGUGCCGGAAGCCGAAGacguauuUUUCg -3'
miRNA:   3'- aCG-GCC--------UACGGCUUUCGGUUUU-------GAAG- -5'
10306 5' -50.5 NC_002687.1 + 250704 0.7 0.988703
Target:  5'- -cCCGGcgGCCGAAAGCaacGACUgUCa -3'
miRNA:   3'- acGGCCuaCGGCUUUCGguuUUGA-AG- -5'
10306 5' -50.5 NC_002687.1 + 249006 0.67 0.999084
Target:  5'- gGCCGGgcGCCGAAAggggucguucGCCAuguAUUUg -3'
miRNA:   3'- aCGGCCuaCGGCUUU----------CGGUuu-UGAAg -5'
10306 5' -50.5 NC_002687.1 + 226959 0.66 0.999598
Target:  5'- cUGCCGGuggugGUGUCGguGGCUccGAAACUg- -3'
miRNA:   3'- -ACGGCC-----UACGGCuuUCGG--UUUUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.