miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10309 5' -51.5 NC_002687.1 + 181306 0.66 0.999388
Target:  5'- --cGGCCGCUUUCGuCGuGAGCgCGu-- -3'
miRNA:   3'- ucaCCGGCGAAAGU-GCuUUCG-GUucu -5'
10309 5' -51.5 NC_002687.1 + 125929 0.66 0.999388
Target:  5'- uGGUGGCUGCUgcuauuucaUCAgGAGAcacGCCAAc- -3'
miRNA:   3'- -UCACCGGCGAa--------AGUgCUUU---CGGUUcu -5'
10309 5' -51.5 NC_002687.1 + 263022 0.66 0.999252
Target:  5'- cAG-GGCCGCgacgUCGuuguUGguGGCCGGGAg -3'
miRNA:   3'- -UCaCCGGCGaa--AGU----GCuuUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 172182 0.66 0.9989
Target:  5'- gAGUGGCCGCUUcUGCGucuGCgaCAAGu -3'
miRNA:   3'- -UCACCGGCGAAaGUGCuuuCG--GUUCu -5'
10309 5' -51.5 NC_002687.1 + 313379 0.66 0.9989
Target:  5'- cGUGGCCGg--UCGCGugaccgcGGUCGAGGa -3'
miRNA:   3'- uCACCGGCgaaAGUGCuu-----UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 164839 0.66 0.9989
Target:  5'- aAGUGGCCGaccaUCuCGAGAucaCCAAGAa -3'
miRNA:   3'- -UCACCGGCgaa-AGuGCUUUc--GGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 182474 0.66 0.9989
Target:  5'- -uUGGCCGCUUUCGCc--AGCUg--- -3'
miRNA:   3'- ucACCGGCGAAAGUGcuuUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 298875 0.66 0.9989
Target:  5'- -uUGGCUGCUgcccuCGGGcgcGGCCAAGGa -3'
miRNA:   3'- ucACCGGCGAaagu-GCUU---UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 238746 0.66 0.998677
Target:  5'- -aUGGCCGCcaUCugGucaccGAGCgAAGAg -3'
miRNA:   3'- ucACCGGCGaaAGugCu----UUCGgUUCU- -5'
10309 5' -51.5 NC_002687.1 + 105755 0.67 0.998113
Target:  5'- aGGUGGCUGuCUUgcgagcguuaUCGCGGAGGCUc--- -3'
miRNA:   3'- -UCACCGGC-GAA----------AGUGCUUUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 38050 0.67 0.998113
Target:  5'- -cUGGCCGUUUUCAgagauCGAAAGCagcGAc -3'
miRNA:   3'- ucACCGGCGAAAGU-----GCUUUCGguuCU- -5'
10309 5' -51.5 NC_002687.1 + 182096 0.67 0.998113
Target:  5'- gAGggGGCUGCccaggacgUCAUGAAGGCCAc-- -3'
miRNA:   3'- -UCa-CCGGCGaa------AGUGCUUUCGGUucu -5'
10309 5' -51.5 NC_002687.1 + 100689 0.67 0.998113
Target:  5'- --gGGCCGCUcUCAaccacucggaaGGAGGCCAuGGAa -3'
miRNA:   3'- ucaCCGGCGAaAGUg----------CUUUCGGU-UCU- -5'
10309 5' -51.5 NC_002687.1 + 108403 0.67 0.997763
Target:  5'- aAGUGGCUGCggUCACcauGGAuguacaCCAAGAa -3'
miRNA:   3'- -UCACCGGCGaaAGUG---CUUuc----GGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 89682 0.67 0.997763
Target:  5'- --aGGCCGCgaUCAUGGAuGCCGu-- -3'
miRNA:   3'- ucaCCGGCGaaAGUGCUUuCGGUucu -5'
10309 5' -51.5 NC_002687.1 + 167153 0.67 0.997763
Target:  5'- cGGUGGCCaGC-UUCACGAAGaauaCgCGAGAc -3'
miRNA:   3'- -UCACCGG-CGaAAGUGCUUUc---G-GUUCU- -5'
10309 5' -51.5 NC_002687.1 + 215666 0.67 0.997763
Target:  5'- cGUGGCCGUcacugUCGCcGucGCCGAGc -3'
miRNA:   3'- uCACCGGCGaa---AGUGcUuuCGGUUCu -5'
10309 5' -51.5 NC_002687.1 + 200483 0.67 0.997763
Target:  5'- uGUGGauacaCCGCUcuuuuuUUCGCGAAAGaCAGGGa -3'
miRNA:   3'- uCACC-----GGCGA------AAGUGCUUUCgGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 10184 0.67 0.997687
Target:  5'- uGUGGCCGCggUCAaauauccCCAAGAg -3'
miRNA:   3'- uCACCGGCGaaAGUgcuuuc-GGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 71702 0.67 0.996372
Target:  5'- --cGGCCGUggaacCACGGAcacuaGGCCGGGGg -3'
miRNA:   3'- ucaCCGGCGaaa--GUGCUU-----UCGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.