miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 316274 0.66 0.940456
Target:  5'- uGAUGGCGGUGgUgCAAugUCGCACCAg -3'
miRNA:   3'- uUUGCCGUCGUgG-GUUugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 316176 0.69 0.870919
Target:  5'- cGGCGGCGGCACCCGG---CGCGgCGg -3'
miRNA:   3'- uUUGCCGUCGUGGGUUuggGCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 310931 0.66 0.960211
Target:  5'- aGAACGGCGGUugCgGcgcGCCaCGCACg- -3'
miRNA:   3'- -UUUGCCGUCGugGgUu--UGG-GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 309567 0.69 0.833262
Target:  5'- --uCGGCGGUGCC---GCCCGCGCUg -3'
miRNA:   3'- uuuGCCGUCGUGGguuUGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 307027 0.68 0.903661
Target:  5'- --cUGGCGGCAUCCGcgaUCGUACCAg -3'
miRNA:   3'- uuuGCCGUCGUGGGUuugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 303809 0.82 0.230273
Target:  5'- --cCGGCAGCACC---ACCCGCACCAa -3'
miRNA:   3'- uuuGCCGUCGUGGguuUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 301785 0.67 0.935859
Target:  5'- -cACGaCAGCACCCG-ACUCGaCGCCu -3'
miRNA:   3'- uuUGCcGUCGUGGGUuUGGGC-GUGGu -5'
10313 3' -57.1 NC_002687.1 + 300403 0.67 0.915271
Target:  5'- --gUGGCuuuGaCGCCCGAGCCCacaCACCAa -3'
miRNA:   3'- uuuGCCGu--C-GUGGGUUUGGGc--GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 291539 0.66 0.952944
Target:  5'- ---aGGCcaagAGCACCCGGACUcaCGCACa- -3'
miRNA:   3'- uuugCCG----UCGUGGGUUUGG--GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 291389 0.68 0.880607
Target:  5'- gGAACgaGGCAGCugCUuuuGuguuuuuuuauugccGCCCGCGCCGg -3'
miRNA:   3'- -UUUG--CCGUCGugGGu--U---------------UGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 284304 0.72 0.698777
Target:  5'- --cCGGCAGCACCaGGGgCUGCGCCu -3'
miRNA:   3'- uuuGCCGUCGUGGgUUUgGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 283925 0.66 0.956682
Target:  5'- cAGCGGCGGCuguagauuccCCUAGACCUGCGu-- -3'
miRNA:   3'- uUUGCCGUCGu---------GGGUUUGGGCGUggu -5'
10313 3' -57.1 NC_002687.1 + 283196 0.68 0.903661
Target:  5'- gGGGCGGCAGCA-CCAGGCgCgGCggggGCCGu -3'
miRNA:   3'- -UUUGCCGUCGUgGGUUUG-GgCG----UGGU- -5'
10313 3' -57.1 NC_002687.1 + 283169 0.72 0.698777
Target:  5'- --uCGGCAGCAUCCGAAgCgGCAgCAa -3'
miRNA:   3'- uuuGCCGUCGUGGGUUUgGgCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 282185 0.66 0.940006
Target:  5'- -uGCGGCGGCGgcuguuguuucCCCaAGACCUgcguuuuGCACCGg -3'
miRNA:   3'- uuUGCCGUCGU-----------GGG-UUUGGG-------CGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 282082 0.67 0.908994
Target:  5'- cAGCGGCGGCucgggucccuUCCAAACCUGCguuuuguACCGc -3'
miRNA:   3'- uUUGCCGUCGu---------GGGUUUGGGCG-------UGGU- -5'
10313 3' -57.1 NC_002687.1 + 281760 0.68 0.897532
Target:  5'- gAggUGGCAGCGCaagCCGcuCCCGUugCGc -3'
miRNA:   3'- -UuuGCCGUCGUG---GGUuuGGGCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 281323 0.66 0.944834
Target:  5'- --cCGGCcGCcgcugccgccACCCAGGCCCcCGCCGa -3'
miRNA:   3'- uuuGCCGuCG----------UGGGUUUGGGcGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 280308 0.67 0.920749
Target:  5'- gGAGCGGUAGCggAUCCAcgaucACCgGCAUCAc -3'
miRNA:   3'- -UUUGCCGUCG--UGGGUu----UGGgCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 267497 0.67 0.908994
Target:  5'- aAAAUGGCuuccaucGGCACCCAuACUgcaacaauugguUGCACCAg -3'
miRNA:   3'- -UUUGCCG-------UCGUGGGUuUGG------------GCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.