miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 153815 0.69 0.870919
Target:  5'- -cGCGGUAGUguuCCUugguaaauAGACCCGCGCUAg -3'
miRNA:   3'- uuUGCCGUCGu--GGG--------UUUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 237073 0.67 0.926006
Target:  5'- uGGACGaauGCAGCGCCUcgaAGACCgUGCGCUAc -3'
miRNA:   3'- -UUUGC---CGUCGUGGG---UUUGG-GCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 83014 0.67 0.909575
Target:  5'- -cGCGGCAGCuucACCguAACCUGUGCa- -3'
miRNA:   3'- uuUGCCGUCG---UGGguUUGGGCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 267497 0.67 0.908994
Target:  5'- aAAAUGGCuuccaucGGCACCCAuACUgcaacaauugguUGCACCAg -3'
miRNA:   3'- -UUUGCCG-------UCGUGGGUuUGG------------GCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 57701 0.68 0.903661
Target:  5'- --uCGGCGGCGCaCGGACaCCGC-CCGc -3'
miRNA:   3'- uuuGCCGUCGUGgGUUUG-GGCGuGGU- -5'
10313 3' -57.1 NC_002687.1 + 8654 0.68 0.897532
Target:  5'- aAAACGGUgcccgccagcAGCAUCCGAcAgCUGCGCCAu -3'
miRNA:   3'- -UUUGCCG----------UCGUGGGUU-UgGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 145680 0.68 0.89119
Target:  5'- -cGCGuCAGcCACCUcgguGCCCGCGCCGu -3'
miRNA:   3'- uuUGCcGUC-GUGGGuu--UGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 291389 0.68 0.880607
Target:  5'- gGAACgaGGCAGCugCUuuuGuguuuuuuuauugccGCCCGCGCCGg -3'
miRNA:   3'- -UUUG--CCGUCGugGGu--U---------------UGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 316176 0.69 0.870919
Target:  5'- cGGCGGCGGCACCCGG---CGCGgCGg -3'
miRNA:   3'- uUUGCCGUCGUGGGUUuggGCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 92832 0.67 0.926006
Target:  5'- gGAACGGCuuauauuagAGCAUCCGugaCCGaCACCGg -3'
miRNA:   3'- -UUUGCCG---------UCGUGGGUuugGGC-GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 85793 0.67 0.926006
Target:  5'- --cCGGCGGC-CCCuuaGGACCCugagggcccugaGCACCGg -3'
miRNA:   3'- uuuGCCGUCGuGGG---UUUGGG------------CGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 233125 0.67 0.930053
Target:  5'- uGACGGCAGCGCCUccauGGCCUccucgucuaacuCGCCAa -3'
miRNA:   3'- uUUGCCGUCGUGGGu---UUGGGc-----------GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 131740 0.66 0.956682
Target:  5'- ---gGGCAucgacaauGCGCCCGGGCCuCGCAUg- -3'
miRNA:   3'- uuugCCGU--------CGUGGGUUUGG-GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 57858 0.66 0.956682
Target:  5'- gGGACGGCuuGUugCauu-CCCGCGCUAa -3'
miRNA:   3'- -UUUGCCGu-CGugGguuuGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 239094 0.66 0.952944
Target:  5'- cAGAUGGCGGC-Cau-GAUCCGUGCCAa -3'
miRNA:   3'- -UUUGCCGUCGuGgguUUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 291539 0.66 0.952944
Target:  5'- ---aGGCcaagAGCACCCGGACUcaCGCACa- -3'
miRNA:   3'- uuugCCG----UCGUGGGUUUGG--GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 281323 0.66 0.944834
Target:  5'- --cCGGCcGCcgcugccgccACCCAGGCCCcCGCCGa -3'
miRNA:   3'- uuuGCCGuCG----------UGGGUUUGGGcGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 316274 0.66 0.940456
Target:  5'- uGAUGGCGGUGgUgCAAugUCGCACCAg -3'
miRNA:   3'- uUUGCCGUCGUgG-GUUugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 4805 0.67 0.935859
Target:  5'- -uACGuCGGCuCCCuguGCCCGCACUg -3'
miRNA:   3'- uuUGCcGUCGuGGGuu-UGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 301785 0.67 0.935859
Target:  5'- -cACGaCAGCACCCG-ACUCGaCGCCu -3'
miRNA:   3'- uuUGCcGUCGUGGGUuUGGGC-GUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.