miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10314 3' -55 NC_002687.1 + 200424 0.65 0.991478
Target:  5'- gUC-CCGAUGCCGuGCgcgCCCucgUGCg -3'
miRNA:   3'- gAGcGGCUACGGU-CGaa-GGGuaaGCG- -5'
10314 3' -55 NC_002687.1 + 95993 0.65 0.991478
Target:  5'- cCUUGCUcAUGCCGGCggCUUGUUUGUu -3'
miRNA:   3'- -GAGCGGcUACGGUCGaaGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 330857 0.65 0.991478
Target:  5'- -aCGCUGAcGCCacAGCaggCCCGcUCGCu -3'
miRNA:   3'- gaGCGGCUaCGG--UCGaa-GGGUaAGCG- -5'
10314 3' -55 NC_002687.1 + 104753 0.65 0.99137
Target:  5'- -aCGCCGugucgaaAUGCC-GCUUCCgGUgauccaccgacuUCGCa -3'
miRNA:   3'- gaGCGGC-------UACGGuCGAAGGgUA------------AGCG- -5'
10314 3' -55 NC_002687.1 + 164648 0.66 0.990341
Target:  5'- -aUGCCGGUGCCGGUg-CCgAUgcCGCc -3'
miRNA:   3'- gaGCGGCUACGGUCGaaGGgUAa-GCG- -5'
10314 3' -55 NC_002687.1 + 146468 0.66 0.990221
Target:  5'- aCUUGCCGAUGCCAcagaaucgguuacGuCUcCCCAcaUGCu -3'
miRNA:   3'- -GAGCGGCUACGGU-------------C-GAaGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 332995 0.66 0.989088
Target:  5'- uUgGCCcuGAUcGCgAGCUUCCUGUUgCGCa -3'
miRNA:   3'- gAgCGG--CUA-CGgUCGAAGGGUAA-GCG- -5'
10314 3' -55 NC_002687.1 + 284268 0.66 0.989088
Target:  5'- -cCGCCGcUGCUGGCUcacaagcCCCAgcCGCu -3'
miRNA:   3'- gaGCGGCuACGGUCGAa------GGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 332250 0.66 0.986206
Target:  5'- uCUUGUCGcu-CCAGCcgCCCAUUCGa -3'
miRNA:   3'- -GAGCGGCuacGGUCGaaGGGUAAGCg -5'
10314 3' -55 NC_002687.1 + 100989 0.66 0.986206
Target:  5'- -aUGCCGAUGUUGGaUUUCCaCAUgUCGCc -3'
miRNA:   3'- gaGCGGCUACGGUC-GAAGG-GUA-AGCG- -5'
10314 3' -55 NC_002687.1 + 208932 0.66 0.984562
Target:  5'- gUCGUCGcUGCU-GCUUCCaucgUCGCu -3'
miRNA:   3'- gAGCGGCuACGGuCGAAGGgua-AGCG- -5'
10314 3' -55 NC_002687.1 + 181625 0.66 0.984562
Target:  5'- uUUGCCGGcuuuuUGCCGGCUUUgCuggcUUUGCu -3'
miRNA:   3'- gAGCGGCU-----ACGGUCGAAGgGu---AAGCG- -5'
10314 3' -55 NC_002687.1 + 208585 0.66 0.984562
Target:  5'- gUCGUCGcUGCU-GCUUCCaucgUCGCu -3'
miRNA:   3'- gAGCGGCuACGGuCGAAGGgua-AGCG- -5'
10314 3' -55 NC_002687.1 + 109780 0.66 0.984562
Target:  5'- aUUGCgGAUGCCAcGCUU-CUGUUgGCg -3'
miRNA:   3'- gAGCGgCUACGGU-CGAAgGGUAAgCG- -5'
10314 3' -55 NC_002687.1 + 39438 0.66 0.984562
Target:  5'- uUUGUCGAUGUCGGCg--CCAUgcuucagcagcUCGCg -3'
miRNA:   3'- gAGCGGCUACGGUCGaagGGUA-----------AGCG- -5'
10314 3' -55 NC_002687.1 + 208732 0.66 0.984562
Target:  5'- gUCGUCGcUGCU-GCUUCCaucgUCGCu -3'
miRNA:   3'- gAGCGGCuACGGuCGAAGGgua-AGCG- -5'
10314 3' -55 NC_002687.1 + 237576 0.67 0.982773
Target:  5'- uUCGCUuAUGagaCGGCUUCCCGagacugCGCu -3'
miRNA:   3'- gAGCGGcUACg--GUCGAAGGGUaa----GCG- -5'
10314 3' -55 NC_002687.1 + 291303 0.67 0.982773
Target:  5'- cCUCGCgCGGUGcCCAGCggCCgCGaggcugUCGUa -3'
miRNA:   3'- -GAGCG-GCUAC-GGUCGaaGG-GUa-----AGCG- -5'
10314 3' -55 NC_002687.1 + 208878 0.67 0.982773
Target:  5'- aUCGUCGcUGCU-GCUUCCaucgUCGCu -3'
miRNA:   3'- gAGCGGCuACGGuCGAAGGgua-AGCG- -5'
10314 3' -55 NC_002687.1 + 89785 0.67 0.982773
Target:  5'- uUCaUCGGUGUCuGCUUCUUGUUCGUa -3'
miRNA:   3'- gAGcGGCUACGGuCGAAGGGUAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.